Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0657500-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:27025487:27029182:1 gene:Os06g0657500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLETHORA 2 description:Hypothetical conserved gene. (Os06t0657500-01);Similar to ANT (Ovule development protein aintegumenta). (Os06t0657500-02)
Sequence

ATGGACATGGACATGAGCTCGGCTTATCCTCACCATTGGCTCTCCTTCTCCCTCTCTAAC
AACTACCACCATGGCCTCCTTGAGGCCCTCTCTACCACATCTGCACCTCCACTTGGAGAG
GAGGGGCCAGCGGAGGGCGCTCCGAAGATGGAGGATTTCCTCGGCGGCCTAGGCGGAGGC
GGCGGCGCCGTCGCCGCCGCTCCGGCAGCTGCCCCGGAGGATCAGCTCAGCTGCGGCGAG
CTTGGTAGCATCGCCGCCGGGTTCTTGCGCCGGTACCCAGCGCCTGAGAACGCCGGCGGG
GTGACCATCGCAATGGCGACCGACGCGGCGGCGGAGCTGGCCGATCCGGCGAGGAGGACC
GCCGAGACGTTCGGGCAACGGACGTCCATCTACCGTGGTGTCACTAGGCACCGGTGGACG
GGGAGGTACGAGGCGCACCTGTGGGACAATAGCTGCCGCCGGGAAGGCCAAAGCCGCAAA
GGCCGCCAAGTCTACTTAGGAGGTTATGATAAGGAGGAGAAGGCCGCAAGAGCTTACGAC
CTCGCCGCCCTAAAGTACTGGGGTCCAACCACCACGACGAACTTCCCTGTTGCCAACTAC
GAGACGGAGCTGGAGGAGATGAAGTCCATGACGCGGCAGGAGTTCATCGCGTCGCTGCGC
AGGAAGAGCAGCGGCTTCTCAAGAGGGGCTTCCATCTACAGAGGAGTAACAAGACATCAT
CAGCACGGCCGGTGGCAAGCGAGGATCGGCAGGGTGGCCGGAAACAAGGACCTGTACTTG
GGCACTTTCAGCACGCAGGAGGAGGCTGCCGAGGCGTACGACATTGCCGCTATCAAGTTC
AGGGGGCTCAACGCCGTCACCAACTTCGACATGAGCCGCTACGACGTCGACAGCATCCTC
AACAGCGACCTGCCGGTCGGCGGCGGAGCCGCCACGCGCGCCTCTAAGTTCCCCTCTGAC
CCATCGCTGCCGCTGCCGTCGCCTGCCATGCCACCGTCGGAGAAGGACTACTGGTCCCTC
CTTGCCCTGCACTACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGTTTCCTGCTTCT
GCATTTGACACCTACGGCTGCTCCTCCGGCGTGAACGTGGACTTCACAATGGGGACTAGC
AGCCACAGCGGCAGCAACAGCAACAGCAGCAGCAGCAGCGCCATATGGGGCACAGCCGCC
GGCGCAGCGATGGGGAGGCAGCAAAACGGCGGCAGCAGCAACAAGCAGAGCAACAGCTAC
TCCGGTAACAACATTCCTTATGCTGCTGCAGCAGCTATGACTTCTGGATCAGCACTCTAC
GGGGGCTCCACCGGTAGCAACGGGACATGGGTGGCGAGTAACACGAGCACGGCTCCCCAC
TTCTACAACTATTTGTTTGGGATGGAGTAG

Peptide Sequence

PEP ID

Os06t0657500-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:27025487:27029182:1 gene:Os06g0657500 transcript:Os06t0657500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLETHORA 2 description:Hypothetical conserved gene. (Os06t0657500-01);Similar to ANT (Ovule development protein aintegumenta). (Os06t0657500-02)
Sequence

MDMDMSSAYPHHWLSFSLSNNYHHGLLEALSTTSAPPLGEEGPAEGAPKMEDFLGGLGGG
GGAVAAAPAAAPEDQLSCGELGSIAAGFLRRYPAPENAGGVTIAMATDAAAELADPARRT
AETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYD
LAALKYWGPTTTTNFPVANYETELEEMKSMTRQEFIASLRRKSSGFSRGASIYRGVTRHH
QHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVDSIL
NSDLPVGGGAATRASKFPSDPSLPLPSPAMPPSEKDYWSLLALHYHHHQQQQQQQQFPAS
AFDTYGCSSGVNVDFTMGTSSHSGSNSNSSSSSAIWGTAAGAAMGRQQNGGSSNKQSNSY
SGNNIPYAAAAAMTSGSALYGGSTGSNGTWVASNTSTAPHFYNYLFGME

Transcript Sequence

Transcript ID

Os06t0657500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:27025487:27029182:1 gene:Os06g0657500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLETHORA 2 description:Hypothetical conserved gene. (Os06t0657500-01);Similar to ANT (Ovule development protein aintegumenta). (Os06t0657500-02)
Sequence

AGCACAACACTGGTCTACATCGATCAATAGCTTTATAGTTATCCTTCCCTCTCATAAGCT
CAAACAAACGCTGGTCAAGTGCTCTTCAAGATCGGCGCATCGATCATATCTATCGCCATG
GACATGGACATGAGCTCGGCTTATCCTCACCATTGGCTCTCCTTCTCCCTCTCTAACAAC
TACCACCATGGCCTCCTTGAGGCCCTCTCTACCACATCTGCACCTCCACTTGGAGAGGAG
GGGCCAGCGGAGGGCGCTCCGAAGATGGAGGATTTCCTCGGCGGCCTAGGCGGAGGCGGC
GGCGCCGTCGCCGCCGCTCCGGCAGCTGCCCCGGAGGATCAGCTCAGCTGCGGCGAGCTT
GGTAGCATCGCCGCCGGGTTCTTGCGCCGGTACCCAGCGCCTGAGAACGCCGGCGGGGTG
ACCATCGCAATGGCGACCGACGCGGCGGCGGAGCTGGCCGATCCGGCGAGGAGGACCGCC
GAGACGTTCGGGCAACGGACGTCCATCTACCGTGGTGTCACTAGGCACCGGTGGACGGGG
AGGTACGAGGCGCACCTGTGGGACAATAGCTGCCGCCGGGAAGGCCAAAGCCGCAAAGGC
CGCCAAGTCTACTTAGGAGGTTATGATAAGGAGGAGAAGGCCGCAAGAGCTTACGACCTC
GCCGCCCTAAAGTACTGGGGTCCAACCACCACGACGAACTTCCCTGTTGCCAACTACGAG
ACGGAGCTGGAGGAGATGAAGTCCATGACGCGGCAGGAGTTCATCGCGTCGCTGCGCAGG
AAGAGCAGCGGCTTCTCAAGAGGGGCTTCCATCTACAGAGGAGTAACAAGACATCATCAG
CACGGCCGGTGGCAAGCGAGGATCGGCAGGGTGGCCGGAAACAAGGACCTGTACTTGGGC
ACTTTCAGCACGCAGGAGGAGGCTGCCGAGGCGTACGACATTGCCGCTATCAAGTTCAGG
GGGCTCAACGCCGTCACCAACTTCGACATGAGCCGCTACGACGTCGACAGCATCCTCAAC
AGCGACCTGCCGGTCGGCGGCGGAGCCGCCACGCGCGCCTCTAAGTTCCCCTCTGACCCA
TCGCTGCCGCTGCCGTCGCCTGCCATGCCACCGTCGGAGAAGGACTACTGGTCCCTCCTT
GCCCTGCACTACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGTTTCCTGCTTCTGCA
TTTGACACCTACGGCTGCTCCTCCGGCGTGAACGTGGACTTCACAATGGGGACTAGCAGC
CACAGCGGCAGCAACAGCAACAGCAGCAGCAGCAGCGCCATATGGGGCACAGCCGCCGGC
GCAGCGATGGGGAGGCAGCAAAACGGCGGCAGCAGCAACAAGCAGAGCAACAGCTACTCC
GGTAACAACATTCCTTATGCTGCTGCAGCAGCTATGACTTCTGGATCAGCACTCTACGGG
GGCTCCACCGGTAGCAACGGGACATGGGTGGCGAGTAACACGAGCACGGCTCCCCACTTC
TACAACTATTTGTTTGGGATGGAGTAGGTGGACTTACTGGCTCTATTAGCTTCATTAGCT
GAAACGAGTGGTAGGCCTAGGACTGACATGGAACTGATCAAAAGTTTTGGCTGCTGATGC
ATGCAGGAATGCAATGCAATGCATCCTTAAGATTATTCTTTTGCTTCCCTGACATAGTCC
TGTAGCAGAGAAACTCATGTATCACCAGTGTTTCTAATTCAAGCTCATTTTTTTAACTAG
TTCC