Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0653200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:26756214:26757596:-1 gene:Os06g0653200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 158 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os06t0653200-01)
Sequence

ATGGGAGGCCCCGGAGCTAGTAGCACCATGTCGTTCGAGCAAGCGTTCCTCAAGAACCTC
CTCCTGAGCCTCCAAGACTGCTCGACGACGAAGCCCCTGGACGCCATGAGCCTCCACGAG
AGGAAGCGAGCCGTCAAGTCCTCCGCCGACTTCGCCATGGCCACGGCGCGCGGCGGCGGC
GCGCGGTGGCCCAAGGCCATCGTCTTGCAGCAGCAGCCGGCGTCGACGACGGCCAGGGCG
CGGCGGTGCGGGAGGATCGTGAGGCGGTGCTGCGGCCGGAAGACGAGATCAGGTGCAGGT
GGTGGTGGTGAGATGGCGAGGAGGCTGCAGGTGAGGAGGAGGGCCATGGCGCTGCGGAAG
GTGATACCCGGAGGCGGCGACGCCATGGACGAGGCGGCGCTGCTCCGCGAGGCCATGGAC
TACGTCGTCCACCTCCGCGCGCAGGTCGACGTCCTCCGCCGCGTCTCGGAAGCCGTGCAG
CTTCAGAGACGATACACGTCGTCCACCTCTCTCCGGGATTATTCTTGGTCTAAATGTGCC
TTGAAAGGAGAGGAGGATTCGAGCATGAATATGAAGCGATGA

Peptide Sequence

PEP ID

Os06t0653200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:26756214:26757596:-1 gene:Os06g0653200 transcript:Os06t0653200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 158 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os06t0653200-01)
Sequence

MGGPGASSTMSFEQAFLKNLLLSLQDCSTTKPLDAMSLHERKRAVKSSADFAMATARGGG
ARWPKAIVLQQQPASTTARARRCGRIVRRCCGRKTRSGAGGGGEMARRLQVRRRAMALRK
VIPGGGDAMDEAALLREAMDYVVHLRAQVDVLRRVSEAVQLQRRYTSSTSLRDYSWSKCA
LKGEEDSSMNMKR

Transcript Sequence

Transcript ID

Os06t0653200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:26756214:26757596:-1 gene:Os06g0653200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 158 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os06t0653200-01)
Sequence

ATCAGAGATTGTGTTTCAGCCACATGTCATGTGTGTTTATCCCACAAACCACAGTTATGC
CGAGAAATGACGACACATCCTCTCGAGTGATCAGGATCCGTCCCCGGCTATAATGCCGGG
GACGCGTATTTATAGTAACAGGTGTAGTGCCATTTGCATAGCTCTCCTCCTAGCTCCTAC
CTGTGCATTTCAGCGTTGCAACAACATCTCTTCCTACTTTTGCTACCAAGCTATAGCCAA
CAAAGTAAGGTAGGCGCCATGGGAGGCCCCGGAGCTAGTAGCACCATGTCGTTCGAGCAA
GCGTTCCTCAAGAACCTCCTCCTGAGCCTCCAAGACTGCTCGACGACGAAGCCCCTGGAC
GCCATGAGCCTCCACGAGAGGAAGCGAGCCGTCAAGTCCTCCGCCGACTTCGCCATGGCC
ACGGCGCGCGGCGGCGGCGCGCGGTGGCCCAAGGCCATCGTCTTGCAGCAGCAGCCGGCG
TCGACGACGGCCAGGGCGCGGCGGTGCGGGAGGATCGTGAGGCGGTGCTGCGGCCGGAAG
ACGAGATCAGGTGCAGGTGGTGGTGGTGAGATGGCGAGGAGGCTGCAGGTGAGGAGGAGG
GCCATGGCGCTGCGGAAGGTGATACCCGGAGGCGGCGACGCCATGGACGAGGCGGCGCTG
CTCCGCGAGGCCATGGACTACGTCGTCCACCTCCGCGCGCAGGTCGACGTCCTCCGCCGC
GTCTCGGAAGCCGTGCAGCTTCAGAGACGATACACGTCGTCCACCTCTCTCCGGGATTAT
TCTTGGTCTAAATGTGCCTTGAAAGGAGAGGAGGATTCGAGCATGAATATGAAGCGATGA
TGAATTGATTGTGCTCTCTTTCAGAAGATTAGGGTTGTGCCATTGCAGACGGACACTGGA
AATTATGGTGACCAGGGATGCATCCCTCAATTATCTTGTACAAAATGGTGAACAATCGGT
TGATGGATCAGGATTTTATCATGTTCTTTGGGAGATCAGTAAGGGGATTGTAAGCTAGCT
ATCTACTGTTGTATTGGGAGGATAGAAACAATCTTGTAGATCATCAGAGAAATTTCTGGG
TGGGTGTCATGTTTAATTTTCCAGCAGTGACATGTTGTCGACTGATCTTTCCTAAATCAT
CCTTGCATATATGGTCTATGTTGCATTTATCGCCTTATCGGAGGATTTCCAGAATCTCAC
TT