Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0651300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:26661060:26664595:-1 gene:Os06g0651300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os06t0651300-01)
Sequence

ATGTCGAGCTCTCACTCGTCCCTGACAGGTTCTGCCACCCCCCGCGCAGGCGCAGTGGGG
CACTTCCGCGGCGGGCTCCGGCCGCCGCCGCCGCCGCCGACGCCGTTCGGGTGGGAGGAG
GCCGCGCGGCTGGAGCGGATCATCAGCGAGGAGGTGGGGCGGCGGCTCATCGAGAAGGAG
GTGGAGCGGCGGCTCATCGAGGAGGACGTGCGCCGCGAGGTCGCCTTCGCCCACGGCCTC
CACGTGCTCCCGCACGATCCCTTCCCGCGACCGCCGCCGCCGCCGCCGGAGATGCCGGTG
GGCATGCACCCGCACCCGCACGAGCCGCCGCCACGCTTCCAGGAGTTGGGGGCATGGGAG
GGATTTCGACCTCGCCGGCAGCACGCCGGAGTCGCTGCTCCGCTTAGGTTCGGGCAGAGG
ATGCTCCTTGGTGGCGCGGAGAGGAGGTGGTCGCCGCCGCCGCCGCCGCGGCCGAAGCCG
AAGCACAAGCTCGTGCTGCGGGAGATCGAACCTGGGGAAAGCTCCGAGGTTCCTTCAGAA
ACAAAACATTCAGAAGCAAAACCTTTGGAAACAAAACCTTTACAAACAAAGGTTTCAGGA
GTGAAGAGGAAAGTAGATGCAATTCCTGCAACCACTCGACCAGGGAAATTACAGAAACCA
GCCCAGGACTGGAGCTGTGCACTATGTCAAGTGAGTGCAACTAGTGAGGGAGCTCTAAAT
GAACATCTTGAAGGGAAAAGGCATAAGGCAAAGCTGGCTCATTGTGGAGCCAGCAATGCG
ATTAAGGATGGCAAAAGCAGCCTGAAAGAAAAAACTGCAAATAAGGATGATGCAGGCCCT
AGTGATGCACCTAAGAAAATATGCATCCAGGTAGATGGAGCAATGCATGAAGTTGTTCAA
AAAAGCAATTACCTGTGGTGCGATCGCTGCAAAGTCAGGTGTGACAACAACGTGACCATG
GCTGACCATCTGCGGGGCAAGAAGCACAGTGGTTTAAACAAGGTTTGGACATCAATAAAT
GCTGTCAGAATGAACAAGAAAAAGGAACAGTCGGCTGCTACATGGGAAGAAACGGTGAAT
GAAAATGAACGTACTGAAATACCAGTGGAAGCTAAGGATGACAGCGCAGGCTTGTCCACC
GAAGAAGACGAAACATGCCATTATGAAATTCCAGTGAAAAATAGTAAGAATGAAGGCACA
TACTTGGCCACTGAAGTAGATCAAAGTGACTCTGAAATTGAAACTCCGGTAGAAATTATG
AGAGAAGGCTTGAACATGGCCACCGATGCCACCGATGAAAATGTCCGTATGGAAGATCCA
CTGGAAATCAAGAAGGAAAACCCCGATGAGACAAATCTTGCGCCAAAGGAGGAGCAACAC
TAA

Peptide Sequence

PEP ID

Os06t0651300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:26661060:26664595:-1 gene:Os06g0651300 transcript:Os06t0651300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os06t0651300-01)
Sequence

MSSSHSSLTGSATPRAGAVGHFRGGLRPPPPPPTPFGWEEAARLERIISEEVGRRLIEKE
VERRLIEEDVRREVAFAHGLHVLPHDPFPRPPPPPPEMPVGMHPHPHEPPPRFQELGAWE
GFRPRRQHAGVAAPLRFGQRMLLGGAERRWSPPPPPRPKPKHKLVLREIEPGESSEVPSE
TKHSEAKPLETKPLQTKVSGVKRKVDAIPATTRPGKLQKPAQDWSCALCQVSATSEGALN
EHLEGKRHKAKLAHCGASNAIKDGKSSLKEKTANKDDAGPSDAPKKICIQVDGAMHEVVQ
KSNYLWCDRCKVRCDNNVTMADHLRGKKHSGLNKVWTSINAVRMNKKKEQSAATWEETVN
ENERTEIPVEAKDDSAGLSTEEDETCHYEIPVKNSKNEGTYLATEVDQSDSEIETPVEIM
REGLNMATDATDENVRMEDPLEIKKENPDETNLAPKEEQH

Transcript Sequence

Transcript ID

Os06t0651300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:26661060:26664595:-1 gene:Os06g0651300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os06t0651300-01)
Sequence

AGTCTCTTCTCTTCTTCCACCTCGAAGCGCGGCCGAGGAGAAAGCCACCGAACAGTGCTG
CGCAGTGCGGCGCAGCGCCGCCGCGGCGAGGGCCATGGAGTTCCGGTTCCGCGCCGGCGA
TCGCAGGCATCGACCTCCCTCCGCCGCGTCCGGGCCCTTCTCCGACACCCGCCGCGGCTA
CTTCGTCGGGGCGGCGCAAGCCATGCGAGGTAATTAAGCAGGGGCTGGATAGAGCTGTGA
TGTCGAGCTCTCACTCGTCCCTGACAGGTTCTGCCACCCCCCGCGCAGGCGCAGTGGGGC
ACTTCCGCGGCGGGCTCCGGCCGCCGCCGCCGCCGCCGACGCCGTTCGGGTGGGAGGAGG
CCGCGCGGCTGGAGCGGATCATCAGCGAGGAGGTGGGGCGGCGGCTCATCGAGAAGGAGG
TGGAGCGGCGGCTCATCGAGGAGGACGTGCGCCGCGAGGTCGCCTTCGCCCACGGCCTCC
ACGTGCTCCCGCACGATCCCTTCCCGCGACCGCCGCCGCCGCCGCCGGAGATGCCGGTGG
GCATGCACCCGCACCCGCACGAGCCGCCGCCACGCTTCCAGGAGTTGGGGGCATGGGAGG
GATTTCGACCTCGCCGGCAGCACGCCGGAGTCGCTGCTCCGCTTAGGTTCGGGCAGAGGA
TGCTCCTTGGTGGCGCGGAGAGGAGGTGGTCGCCGCCGCCGCCGCCGCGGCCGAAGCCGA
AGCACAAGCTCGTGCTGCGGGAGATCGAACCTGGGGAAAGCTCCGAGGTTCCTTCAGAAA
CAAAACATTCAGAAGCAAAACCTTTGGAAACAAAACCTTTACAAACAAAGGTTTCAGGAG
TGAAGAGGAAAGTAGATGCAATTCCTGCAACCACTCGACCAGGGAAATTACAGAAACCAG
CCCAGGACTGGAGCTGTGCACTATGTCAAGTGAGTGCAACTAGTGAGGGAGCTCTAAATG
AACATCTTGAAGGGAAAAGGCATAAGGCAAAGCTGGCTCATTGTGGAGCCAGCAATGCGA
TTAAGGATGGCAAAAGCAGCCTGAAAGAAAAAACTGCAAATAAGGATGATGCAGGCCCTA
GTGATGCACCTAAGAAAATATGCATCCAGGTAGATGGAGCAATGCATGAAGTTGTTCAAA
AAAGCAATTACCTGTGGTGCGATCGCTGCAAAGTCAGGTGTGACAACAACGTGACCATGG
CTGACCATCTGCGGGGCAAGAAGCACAGTGGTTTAAACAAGGTTTGGACATCAATAAATG
CTGTCAGAATGAACAAGAAAAAGGAACAGTCGGCTGCTACATGGGAAGAAACGGTGAATG
AAAATGAACGTACTGAAATACCAGTGGAAGCTAAGGATGACAGCGCAGGCTTGTCCACCG
AAGAAGACGAAACATGCCATTATGAAATTCCAGTGAAAAATAGTAAGAATGAAGGCACAT
ACTTGGCCACTGAAGTAGATCAAAGTGACTCTGAAATTGAAACTCCGGTAGAAATTATGA
GAGAAGGCTTGAACATGGCCACCGATGCCACCGATGAAAATGTCCGTATGGAAGATCCAC
TGGAAATCAAGAAGGAAAACCCCGATGAGACAAATCTTGCGCCAAAGGAGGAGCAACACT
AACACCATAGATTGGTGTTTTGCTTGACTTCTTCATTAATTAAGACAAGCTTATGCCAAA
CATATGCCCGTTCTCTCTTCAACATATGGAGCTCACAGGGTAACAACACTACTTAGGGAT
AAATTTTTCTTGTAAAGTTGTTTGGCTACTGGTAATCAAGTTAGGAACCATGCAAGTTGT
TTATGAGTTGTGCCCTCTGTGCCTAGCGCCATAGATGACTTGCAAGATTTCTAACTTGAG
TGCCAGTGTCCAAGTAATTTTGCATGGAACATTTCTCCCTAATTTGTGTAGCTTGTTATT
CTGTAAGGTGCATATGTTACCAGAATGGATAATTTGCATGATCTCAGAGAGAAACTGATG
TGGGCATGCGAAGTATTTTCAGCGAGTTCAATATCTTAGCCGCCTCTATGCTACTGCTAG
TTGCATTAGTTTTGATTGATGCTTGGCAGTGACCAAGCTGAGCTGAGTCCTGTCTATATA
GAGGTGACGAGTTGCTTAGCTCCCTGTAACTGTACTTCAGTTATTAGTTTCTTCGTAACC