Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0645500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:26346136:26347098:-1 gene:Os06g0645500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sterile alpha motif homology domain containing protein. (Os06t0645500-01)
Sequence

ATGGATTGGTACGCGTGGCTGGCGAAGACCGGGTTGGCGCCGGCGCTGGCGTACGAGTAC
GGCCGCCTCTTCAACCAGAACGAGCTGGAGCGCGGCGACGCCGCGCACTTCGACCACGAC
CTCCTCAAGAGCATGGGCATCGCCGTCGCCAAGCACCGCCTCGAGATCCTCAAGCTCGCC
AAGAAGGACTCCTCCTCCGCCGCCGACGCAGGCGGTGGCGACTCCTCGTCGTCGTCGTAC
GCGCAGCTGATCGCGCGCAAGGCCGGGAGGTGCATCGCGCGGTGCGCGCGGCGGCTGGCG
CGACCGCGGGGTGTCGGTGGAGGGAGGGGGTCGTCGGTGACCGTGGTGCCGAGGATATGC
AGCGGCGACGACGCCGTCCGCGTGGGGGCAGTGCAGGCGGCGGCGACGAGGAGGAGGAGG
AGCGTCAAGAAGATGGTGCTCATGATCACCGACGGCGGCGCCACCGCCGCGAGGGGCGGC
GTCGGCTTCGCCGCCGGCCGGTTCTCGGGGTCGCAGAAGGCGAGCCTGATGTTCCACGAC
TGCTACGAGGAGGAGGACGACGACTACGACCACGAGGAGGAAGCGCGGTGCGGCGACGGA
GCCGAGGGCGGCGACGAGGATGCCGAGGAGGAACGGTGCTCCGACGGCGGCGGCGGCGGC
GGCACCGACGTCGAGATCAAGTGGGACTCCATGTTCCAGGACCTGAAGCCGACGTGA

Peptide Sequence

PEP ID

Os06t0645500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:26346136:26347098:-1 gene:Os06g0645500 transcript:Os06t0645500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sterile alpha motif homology domain containing protein. (Os06t0645500-01)
Sequence

MDWYAWLAKTGLAPALAYEYGRLFNQNELERGDAAHFDHDLLKSMGIAVAKHRLEILKLA
KKDSSSAADAGGGDSSSSSYAQLIARKAGRCIARCARRLARPRGVGGGRGSSVTVVPRIC
SGDDAVRVGAVQAAATRRRRSVKKMVLMITDGGATAARGGVGFAAGRFSGSQKASLMFHD
CYEEEDDDYDHEEEARCGDGAEGGDEDAEEERCSDGGGGGGTDVEIKWDSMFQDLKPT

Transcript Sequence

Transcript ID

Os06t0645500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:26346136:26347098:-1 gene:Os06g0645500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sterile alpha motif homology domain containing protein. (Os06t0645500-01)
Sequence

GTAGTAGTATAATTTGGTAGTAGTGAGCAAGTGAAACTGCAAGTGAGCTAAGGTGCAAGA
AGAGAGAGGTGGAGATGGATTGGTACGCGTGGCTGGCGAAGACCGGGTTGGCGCCGGCGC
TGGCGTACGAGTACGGCCGCCTCTTCAACCAGAACGAGCTGGAGCGCGGCGACGCCGCGC
ACTTCGACCACGACCTCCTCAAGAGCATGGGCATCGCCGTCGCCAAGCACCGCCTCGAGA
TCCTCAAGCTCGCCAAGAAGGACTCCTCCTCCGCCGCCGACGCAGGCGGTGGCGACTCCT
CGTCGTCGTCGTACGCGCAGCTGATCGCGCGCAAGGCCGGGAGGTGCATCGCGCGGTGCG
CGCGGCGGCTGGCGCGACCGCGGGGTGTCGGTGGAGGGAGGGGGTCGTCGGTGACCGTGG
TGCCGAGGATATGCAGCGGCGACGACGCCGTCCGCGTGGGGGCAGTGCAGGCGGCGGCGA
CGAGGAGGAGGAGGAGCGTCAAGAAGATGGTGCTCATGATCACCGACGGCGGCGCCACCG
CCGCGAGGGGCGGCGTCGGCTTCGCCGCCGGCCGGTTCTCGGGGTCGCAGAAGGCGAGCC
TGATGTTCCACGACTGCTACGAGGAGGAGGACGACGACTACGACCACGAGGAGGAAGCGC
GGTGCGGCGACGGAGCCGAGGGCGGCGACGAGGATGCCGAGGAGGAACGGTGCTCCGACG
GCGGCGGCGGCGGCGGCACCGACGTCGAGATCAAGTGGGACTCCATGTTCCAGGACCTGA
AGCCGACGTGATTGAGTTGAGGCAATTTGATTAATTCGCGAGTTTGTGTGTAGCTTTTTG
TGAGAGAATTTTTACATCTCTCTTTGTGGTGCGAGAGCTTAATTAGGATGGTAATGTGTA
CGTGTCTATTTGCCATGAGTTTAGACGATAATAATATCGAGCGCAAATGTTTTGAGTGAG
ATT