Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0634100-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:25711868:25714678:-1 gene:Os06g0634100 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase) domain containing protein. (Os06t0634100-01)
Sequence

ATGTCCTTCCTGGCGCCCGGACGCGGCCGCCTCCTCCGGGTGCTCCCCACAAGGCGGCAC
CGTCTTCCGCCTCCCCAAGGGTCAGGAGGCTACGCGGCGTGCTTCCGGCGGTGCAAGGCG
CACTTCTTGCTCGATGGAGTCGAGGATGCGGTGGAGGGAGCCGCCGAGCCGCAGCAGCCA
CCGGTGTCACTTGCGAAGAGCCTGGCCTCTCTCACCGAGGAGTCGGCCGTGGCCGCTCAG
AGGCAGAGGAAGCCCCTGCTGCGGATGGAGCGGAAGAGGCTGGCTGAGCTCAGGATCAAG
AAGAGGGTCAAGGCGCAGTATTTGAACGGCAAGTTTCATGATCTCATGGCTAACGTGGTG
GCTAGCACTGATACTTTGGAGGATGCTTATGACATTGTTCGGCTCAATTCAAATATTGAC
ATGTCATCGGTGAGGGATGATGTTTGCTTTGCTACATTGGCGGAGCTGCTCAGGACTGGT
GAGTTCGATGTCAGAGCGAATGTTTATGCGGTGGTTGCAAAGAGGCGAGATGGAGGGAGG
CTTGTTCTCCCACGGTTGAACTTGAGAATTATTCAGGAAGCAGTAAGGGTGGTGCTTGAG
GTTGTTTACAGACCCCATTTCTCAAAGATATCACATGGCTGTCGGAGCGGCCGAGGGCAT
CAGTCGGCTCTGAGGTTCATTTCCAATGAAATTGGGATTCCAGATTGGTGCTTTACTATC
CCCATGCATAAAGAAGTAGATAGAAATGTTCTCTCTAAGATTATCTGTCTAATACAGGAA
AAGATCGATGACAATCAGTTAGTTACATTCATGCAACACATGTTTGATGCAGAGGTGATC
AATTTGGTATTTGGAGGATTTCCTAAAGGCCATGGGCTTCCTCAAGAAGGAGTACTTGCG
CCAATCCTAATGAACATATACCTCGACAGTTTTGACCACGAGGTGTTCAGGATTTGCATG
AGGCATGAAGGCCTTGGTTCAGAGGCAGCAGATGTTTCAGACAACCAGGAGTCAAATTTG
CGCCACTGGTTTCGAAGTCAAATTTCAGGCTTGAAGGATAGGGAGGAAAACAGTGACAAT
CAAACAGACTATCCACTAAAAACAAAACTATATGCTTGTAGATACATGGACGAGATCTTT
GTTGCAGTTGTTGGATCCAGAGATATTGCAGAAGATATAAAATCGGAAATGATTACTTAC
TTAAGAAAAACACTATTCTTGGAAGTTGATGACAGGTTGTATCTTATGCCGGTCAGAAGT
AATTCCCGGGGCTTACAGTTTGCTGGCTCTATGGTAAGAGTTACAACAAAGGAAAGTGCT
GCACTGAAAGCTGTGCATAAGCTGAAGGAAAAGGTTCATTTATTTGCTTCTCAGAAGCAA
GAGATATGGGATGCTATGAATCTTAGGTTAGGAAAGAAGTGGTTGGCATATGGTTTGAGA
AGAGTAAAGGAGTCTGAGATCAAGTCACTTGGTCTTAGCACGCCTTTGTTGGATCACATT
GCACAGTTTAGGAAAGACTGTATGAAGACAGATCATTGGTTCAAAACTTTACTCAAGGTA
TGGATGCAGGATATCAATGCTAAACGCGAAGCTGATGAGAGCATACTCCTGTCAAAATAC
ATTGCTGAACCATCACTTCCGCAGGACCTCAAAGACGCGTTCAACAACTTTCAGAAGCAA
GCCAAAGATTACATCTCATCAGAAACTGCTGCCACAGAAGCATTATTGTCCAGCTTAAAG
AATAAAGAATCAGCTATTACCTGCACTGATGGTGCTGTCATTAAGATCCATGCTCCTATT
AGCTATATCCATAAGTGCCTTAATCGTTATGGTCTAATTAATCTTGAAGGTTTCCCTAAG
CACGTTTCAGCCCTTGTTTTGCAAGACGATGAGCTAATCATAAGTTGGTTTGCAGGAATA
ATTCAACGTTGGATGAGATGGTTCTCAGAGGTTGACAATTTTAAAGAACTTAAGCTTATG
TTGGTTGAATGTGTCAGGAAATCCTGCATCAGGACATTATCGGCAAAGTACCGAATGTAT
GAGAAAATAACAGAAAAGCGATTTGAACTTGATGATTATGGTATTCCAATGGCCGAGGAC
TTTGAGGCAATAATGGCACCTTTAGAATCTAGTTCGTCGGTTTGCACTGATGAAGCTCTG
ATGTATGGCATTTCTAGTAGTGGATTGTTTGTGCTCACCCTCTCAAGAGTTAGAGTTCCT
TCTCGGCAATTTGACTGTTTTGTCATGGGATGCCAATCTGCATCGCTGAGTATGTATGTT
CTTCATGTCAAAGAGAGACAGCGGTTTCCAGGATTTAGGACAGGTTTCTCATCATCAATT
CATGGCAGTTTGGATGGTAGACGGGTTGGGTTGTGCACTCAACATGTTAAGGATTTATAT
CTAGGACACATCTCCCTTCAGTCAGTTGATTTTGGTGTGCTGATAGATGACTCTAATAAA
ATACCTTAA

Peptide Sequence

PEP ID

Os06t0634100-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:25711868:25714678:-1 gene:Os06g0634100 transcript:Os06t0634100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase) domain containing protein. (Os06t0634100-01)
Sequence

MSFLAPGRGRLLRVLPTRRHRLPPPQGSGGYAACFRRCKAHFLLDGVEDAVEGAAEPQQP
PVSLAKSLASLTEESAVAAQRQRKPLLRMERKRLAELRIKKRVKAQYLNGKFHDLMANVV
ASTDTLEDAYDIVRLNSNIDMSSVRDDVCFATLAELLRTGEFDVRANVYAVVAKRRDGGR
LVLPRLNLRIIQEAVRVVLEVVYRPHFSKISHGCRSGRGHQSALRFISNEIGIPDWCFTI
PMHKEVDRNVLSKIICLIQEKIDDNQLVTFMQHMFDAEVINLVFGGFPKGHGLPQEGVLA
PILMNIYLDSFDHEVFRICMRHEGLGSEAADVSDNQESNLRHWFRSQISGLKDREENSDN
QTDYPLKTKLYACRYMDEIFVAVVGSRDIAEDIKSEMITYLRKTLFLEVDDRLYLMPVRS
NSRGLQFAGSMVRVTTKESAALKAVHKLKEKVHLFASQKQEIWDAMNLRLGKKWLAYGLR
RVKESEIKSLGLSTPLLDHIAQFRKDCMKTDHWFKTLLKVWMQDINAKREADESILLSKY
IAEPSLPQDLKDAFNNFQKQAKDYISSETAATEALLSSLKNKESAITCTDGAVIKIHAPI
SYIHKCLNRYGLINLEGFPKHVSALVLQDDELIISWFAGIIQRWMRWFSEVDNFKELKLM
LVECVRKSCIRTLSAKYRMYEKITEKRFELDDYGIPMAEDFEAIMAPLESSSSVCTDEAL
MYGISSSGLFVLTLSRVRVPSRQFDCFVMGCQSASLSMYVLHVKERQRFPGFRTGFSSSI
HGSLDGRRVGLCTQHVKDLYLGHISLQSVDFGVLIDDSNKIP

Transcript Sequence

Transcript ID

Os06t0634100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:25711868:25714678:-1 gene:Os06g0634100 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase) domain containing protein. (Os06t0634100-01)
Sequence

CTAGCCGACGCCGCCGCCGCCGCGGCGACGGCGCGAGCGACGCCTCGTCGCCCTTGGAGA
GGCCTCGACAGCGCGCGGCGCGGGCGCGCCACAAGCTCCGCTCGGCTTAGCCGTCGCCGC
CGCGAAGCGAAGGCCGGGGGCCCTCGCCGCGCTCTCCTCGGCATTCCGCGCACGCCACCT
GTTCGACCCAATGCGCAGCTAGACCGGCTAGAGATTAAGGTTGCGCGATCCCATGTCCTT
CCTGGCGCCCGGACGCGGCCGCCTCCTCCGGGTGCTCCCCACAAGGCGGCACCGTCTTCC
GCCTCCCCAAGGGTCAGGAGGCTACGCGGCGTGCTTCCGGCGGTGCAAGGCGCACTTCTT
GCTCGATGGAGTCGAGGATGCGGTGGAGGGAGCCGCCGAGCCGCAGCAGCCACCGGTGTC
ACTTGCGAAGAGCCTGGCCTCTCTCACCGAGGAGTCGGCCGTGGCCGCTCAGAGGCAGAG
GAAGCCCCTGCTGCGGATGGAGCGGAAGAGGCTGGCTGAGCTCAGGATCAAGAAGAGGGT
CAAGGCGCAGTATTTGAACGGCAAGTTTCATGATCTCATGGCTAACGTGGTGGCTAGCAC
TGATACTTTGGAGGATGCTTATGACATTGTTCGGCTCAATTCAAATATTGACATGTCATC
GGTGAGGGATGATGTTTGCTTTGCTACATTGGCGGAGCTGCTCAGGACTGGTGAGTTCGA
TGTCAGAGCGAATGTTTATGCGGTGGTTGCAAAGAGGCGAGATGGAGGGAGGCTTGTTCT
CCCACGGTTGAACTTGAGAATTATTCAGGAAGCAGTAAGGGTGGTGCTTGAGGTTGTTTA
CAGACCCCATTTCTCAAAGATATCACATGGCTGTCGGAGCGGCCGAGGGCATCAGTCGGC
TCTGAGGTTCATTTCCAATGAAATTGGGATTCCAGATTGGTGCTTTACTATCCCCATGCA
TAAAGAAGTAGATAGAAATGTTCTCTCTAAGATTATCTGTCTAATACAGGAAAAGATCGA
TGACAATCAGTTAGTTACATTCATGCAACACATGTTTGATGCAGAGGTGATCAATTTGGT
ATTTGGAGGATTTCCTAAAGGCCATGGGCTTCCTCAAGAAGGAGTACTTGCGCCAATCCT
AATGAACATATACCTCGACAGTTTTGACCACGAGGTGTTCAGGATTTGCATGAGGCATGA
AGGCCTTGGTTCAGAGGCAGCAGATGTTTCAGACAACCAGGAGTCAAATTTGCGCCACTG
GTTTCGAAGTCAAATTTCAGGCTTGAAGGATAGGGAGGAAAACAGTGACAATCAAACAGA
CTATCCACTAAAAACAAAACTATATGCTTGTAGATACATGGACGAGATCTTTGTTGCAGT
TGTTGGATCCAGAGATATTGCAGAAGATATAAAATCGGAAATGATTACTTACTTAAGAAA
AACACTATTCTTGGAAGTTGATGACAGGTTGTATCTTATGCCGGTCAGAAGTAATTCCCG
GGGCTTACAGTTTGCTGGCTCTATGGTAAGAGTTACAACAAAGGAAAGTGCTGCACTGAA
AGCTGTGCATAAGCTGAAGGAAAAGGTTCATTTATTTGCTTCTCAGAAGCAAGAGATATG
GGATGCTATGAATCTTAGGTTAGGAAAGAAGTGGTTGGCATATGGTTTGAGAAGAGTAAA
GGAGTCTGAGATCAAGTCACTTGGTCTTAGCACGCCTTTGTTGGATCACATTGCACAGTT
TAGGAAAGACTGTATGAAGACAGATCATTGGTTCAAAACTTTACTCAAGGTATGGATGCA
GGATATCAATGCTAAACGCGAAGCTGATGAGAGCATACTCCTGTCAAAATACATTGCTGA
ACCATCACTTCCGCAGGACCTCAAAGACGCGTTCAACAACTTTCAGAAGCAAGCCAAAGA
TTACATCTCATCAGAAACTGCTGCCACAGAAGCATTATTGTCCAGCTTAAAGAATAAAGA
ATCAGCTATTACCTGCACTGATGGTGCTGTCATTAAGATCCATGCTCCTATTAGCTATAT
CCATAAGTGCCTTAATCGTTATGGTCTAATTAATCTTGAAGGTTTCCCTAAGCACGTTTC
AGCCCTTGTTTTGCAAGACGATGAGCTAATCATAAGTTGGTTTGCAGGAATAATTCAACG
TTGGATGAGATGGTTCTCAGAGGTTGACAATTTTAAAGAACTTAAGCTTATGTTGGTTGA
ATGTGTCAGGAAATCCTGCATCAGGACATTATCGGCAAAGTACCGAATGTATGAGAAAAT
AACAGAAAAGCGATTTGAACTTGATGATTATGGTATTCCAATGGCCGAGGACTTTGAGGC
AATAATGGCACCTTTAGAATCTAGTTCGTCGGTTTGCACTGATGAAGCTCTGATGTATGG
CATTTCTAGTAGTGGATTGTTTGTGCTCACCCTCTCAAGAGTTAGAGTTCCTTCTCGGCA
ATTTGACTGTTTTGTCATGGGATGCCAATCTGCATCGCTGAGTATGTATGTTCTTCATGT
CAAAGAGAGACAGCGGTTTCCAGGATTTAGGACAGGTTTCTCATCATCAATTCATGGCAG
TTTGGATGGTAGACGGGTTGGGTTGTGCACTCAACATGTTAAGGATTTATATCTAGGACA
CATCTCCCTTCAGTCAGTTGATTTTGGTGTGCTGATAGATGACTCTAATAAAATACCTTA
AGTTCTTGT