Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0621900-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:24982296:24986652:1 gene:Os06g0621900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 16 description:Similar to Alpha-expansin OsEXPA16 (Fragment). (Os06t0621900-01)
Sequence	ATGAGCTCAGTGCTGCTGTTCTTGCTTCTGCTGCTGCTTTCTGGAGTGAGCTTGAGTGGC TGCATAAGGCTTGGCAATGGCGGGTATGAGGAGTGGAGGATGGGCTCGGCGACCTACATC AAGGAGTCCCTGGGGCACCCGCTGAATGATGGTGGTGGAGCCTGTGGGTACGGCGACCTG GACATCTTCAGGTACGGGAGGTACACCGCCGGCGTGAGCGGCGCGCTGTTCGGGCGCGGC AGCGCGTGCGGCGGCTGCTACGAGGTGCGGTGCGTGAACCACGTGCTGTGGTGCCTCCGC GGCAGCCCGACGGTGGTGGTGACGGCCACCGACTTCTGCGCGCCCAACCTCGGACTCTCC GACGACTACGGCGGCTGGTGCAACTTCCCCAAGGAGCACTTCGAGATGTCGGAGGCCGCG TTCCTCCGCGTCGCCAAGGCCAAGGCCGACATTGTGCCGGTGCAGTTCCGGAGGGTGAGC TGTGACAGGGCAGGGGGGATGAGGTTCACCATCACCGGCGGCGCCAGCTTCCTGCAGGTG CTGATCACGAACGTGGCGGCGGACGGGGAGGTGGCGGCGGTGAAGGTGAAAGGGTCGAGG ACCGGGTGGATCCCGATGGGGAGGAACTGGGGCCAGAACTGGCAGTGCGACGCCGACCTC CGCGGCCAGCCGCTGTCGTTCGAGGTCACCGGCGGGAGGGGCCGCACGGTCGTCGCCTAC AGCGTCGCGCCGCCGGACTGGATGTTCGCGCAGACCTTCGAAGGCAAGCAGTTCGTCGAG TAG

Peptide Sequence

PEP ID	Os06t0621900-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:24982296:24986652:1 gene:Os06g0621900 transcript:Os06t0621900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 16 description:Similar to Alpha-expansin OsEXPA16 (Fragment). (Os06t0621900-01)
Sequence	MSSVLLFLLLLLLSGVSLSGCIRLGNGGYEEWRMGSATYIKESLGHPLNDGGGACGYGDL DIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLS DDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQV LITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAY SVAPPDWMFAQTFEGKQFVE

Transcript Sequence

Transcript ID	Os06t0621900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:24982296:24986652:1 gene:Os06g0621900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 16 description:Similar to Alpha-expansin OsEXPA16 (Fragment). (Os06t0621900-01)
Sequence	CAGGCCAAAACACTGCAACATTTCAGACTTCACAGTTCACAGTGAGTTCAGACCAAGAAC ACAAGAATACCAAAAAGAACAGCACCAAGAACTCTCCTCCAATCCATCACAGACATTTTT CTTCCCTCCAAGAGAGGCATTGATCATCAGAGAGTAGAGCCAGGGCGTGTGTGTGTGTGA TGAGCTCAGTGCTGCTGTTCTTGCTTCTGCTGCTGCTTTCTGGAGTGAGCTTGAGTGGCT GCATAAGGCTTGGCAATGGCGGGTATGAGGAGTGGAGGATGGGCTCGGCGACCTACATCA AGGAGTCCCTGGGGCACCCGCTGAATGATGGTGGTGGAGCCTGTGGGTACGGCGACCTGG ACATCTTCAGGTACGGGAGGTACACCGCCGGCGTGAGCGGCGCGCTGTTCGGGCGCGGCA GCGCGTGCGGCGGCTGCTACGAGGTGCGGTGCGTGAACCACGTGCTGTGGTGCCTCCGCG GCAGCCCGACGGTGGTGGTGACGGCCACCGACTTCTGCGCGCCCAACCTCGGACTCTCCG ACGACTACGGCGGCTGGTGCAACTTCCCCAAGGAGCACTTCGAGATGTCGGAGGCCGCGT TCCTCCGCGTCGCCAAGGCCAAGGCCGACATTGTGCCGGTGCAGTTCCGGAGGGTGAGCT GTGACAGGGCAGGGGGGATGAGGTTCACCATCACCGGCGGCGCCAGCTTCCTGCAGGTGC TGATCACGAACGTGGCGGCGGACGGGGAGGTGGCGGCGGTGAAGGTGAAAGGGTCGAGGA CCGGGTGGATCCCGATGGGGAGGAACTGGGGCCAGAACTGGCAGTGCGACGCCGACCTCC GCGGCCAGCCGCTGTCGTTCGAGGTCACCGGCGGGAGGGGCCGCACGGTCGTCGCCTACA GCGTCGCGCCGCCGGACTGGATGTTCGCGCAGACCTTCGAAGGCAAGCAGTTCGTCGAGT AGGTGTCGACGATGTGGGTGTCATTCTTGGAATGATTGTAATTATTATGGTTATAATTAT ATTATACAGGTGAAAAACAACTGTTTTGGTTTGGTTTTGGTTTGGATGTTGTTGTTTGAT CTGCTCAGCATGGCAAACGAAATTATTATAGAGTTAATCAGTTAATGAAGGATTGACAAA AAAAATGTTTGGCT