Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0620600-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:24917274:24920283:-1 gene:Os06g0620600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hrf1 family protein. (Os06t0620600-01)
Sequence

ATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCT
AATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGA
GCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAG
TATCTGTCCAATCCTCAGTACTACTTTCAAGTCAACAGTCAGTATGTGAGAAACAAGTTG
AAGGTGATCTTGTTCCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTG
GGAGGAAGGTTGTCATACAAACCTCCAATTCAAGATATCAATGCTCCAGATCTTTACATT
CCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGG
AGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTG
CAAGTAATCCTGATCAGAGTTCTACTGTACACGCTGGGAAGTGGTGAAGCGCCATTGCTG
GACATTGTGGCCTATGCTGGGTATGGATTTGCTGGTACATCACTTGCAATGCTTGTCCGC
GTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTT
TTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACAC
CCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTC
TGGCTAGGCAACATCAGCGGGTGA

Peptide Sequence

PEP ID

Os06t0620600-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:24917274:24920283:-1 gene:Os06g0620600 transcript:Os06t0620600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hrf1 family protein. (Os06t0620600-01)
Sequence

MAAMNNDLGGLGGRPATSQANPFESALYGAGPGLIRSGLGAYGEKFLGSSSEFMQSNITQ
YLSNPQYYFQVNSQYVRNKLKVILFPFLHRGHWTRITEPVGGRLSYKPPIQDINAPDLYI
PLMAFGTYVVIAGYALGVLGRFTPEALTLQFTKGLLGWFLQVILIRVLLYTLGSGEAPLL
DIVAYAGYGFAGTSLAMLVRVFWSPSYYFVLPWFSICTGVFLVKTMKRVLLGAPRSYERH
PSRNHYFLLFLAVVQFPMLFWLGNISG

Transcript Sequence

Transcript ID

Os06t0620600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24917274:24920283:-1 gene:Os06g0620600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hrf1 family protein. (Os06t0620600-01)
Sequence

TTTGCTCCTCTTCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAG
CGGCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATC
TGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTAT
ATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAG
GTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACT
ACTTTCAAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCC
TGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGGAGGAAGGTTGTCATACAAAC
CTCCAATTCAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGT
ATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCA
CTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTC
TACTGTACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGT
ATGGATTTGCTGGTACATCACTTGCAATGCTTGTCCGCGTCTTCTGGAGCCCGTCATATT
ATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGA
GGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTTC
TTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGT
GATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGG
TTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAA
GAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCA
ATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTT
TGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATA
AAATCAGATGATAATGTTCCTTGTCGTGC