Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0619000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:24866897:24871171:1 gene:Os06g0619000 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os06t0619000-01)
Sequence

ATGGGCACTGAATTAACTGTTACAGGATGGTTCTTGTCACCTATTATACGGGAAATGCAA
GATACTGCACTGTCCTACATAAGGGGGCAATTCAGTTGGGAGAAGGATCAAGAAAAGGAC
CTTGAGCGTCTTGATACTATCCTTACAGAGATCTTGGCCATCGTGGACGCCATCGAGAAG
CGGGAGATCAAGGATGGGAATCAGAGGAAGCTGCTCCGGAAGCTCAAGGATGCCATTTAC
AGCGCCGTTGATGTGCTTGACAGCTTCCAGTACATGGCCCTCAAGTCTAAAGTCGACAGC
CAAGCTATGGTGAGTCGCGTTACCTCATCCTGTGTTTACTTGGGTAAGCGCGTAGTAGGT
ACTGATAAGTTCCGGAGGAAGCTAACCGATATGTTGAAAAAATTGGATGAGGTTAAAACA
ACTGCGGATACCTTGTTCAAATTGGTTAGTTTTGATAGTGCTACTGCAAAGCTGCTCCCA
GTCACACAGGCACGTGTAACGTCTCCTTTGAAGGAAGAGAACCACATATATGGTAGAAAA
GATGATCTTGATAGGCTGAGAGATTTGTTGCTTATGCAAAGTGATAGTAGTGCACCTGGA
CCTAGTAACTCATGTGTTCCTGTTATATCCATCATTGGTGTTGGTGGGATTGGGAAGACA
AGCCTAGCACAATTAGCTTTCAGAGATGAAAGGATACGTGCGAGCTTTGGTCTCAGGATC
TGGGTTTGTGTATCCGATATTTATGATGAGATAACATTGGCAAGGGATATTTTAGAATCT
GTAACAGGTGAAAATTATCGCAGTGTTACTAAATTGGATGAATTGAAGAATGTTCTTCAA
GAAAAGATAAGTCAAAAGAACTTTTTTCTTGTATTGGATGATGTATGGTATGATGAGAAC
AGGACAAATTGGGAGAATGAATTAGTATGGGACGGAGTTTTATCAACATTGGATACTGGA
CTGGGAGGATCCAAAATTCTGGTGACGACTCGAACCAACAAAGCCAGTGAACTCCTACGT
GCTGGAGCCTGTTTACAATTAGGGGGATTGAATAGAGATGATTACTGGATGTTATTCAAA
AGCTGTGCCTTTGGTGAGAAACATCCAGGACTGTTTCAAGAACTTAAGGAAATAGGAATG
CAGATTGCTGAAAGATTGAATGGTTTGCCCTTAGCAGCAAAGGTAATCGGTCGCCTATTG
AATGTTGATTTAGATTCAAGTCATTGGAAGAAAGTGCTAGAGAGTGACATATCAGGTGAT
GTTATGAAGGTTCTCAGGTTGAGTTACCAACACTTGCCCATCCACTTGCAACTATGCTTC
AGCTTCTGCAGCTTATTCCCGAAGAACTGGCGTTTTGATCCCAGGAGGCTTACAGACATG
TGGATTTCACAGGGTTTTGTTCAGAAGGAGGATGAGTCTGACAATGACATGAATGTTGAA
GATGTTGCGAAGGGCTACTTTAATGATCTTGTACAAAGATCATTCTTCGAGAGATCTTTG
TTAGACCTTCCAATAGAGTATGTCATGCATGACTTGATCAATGACCTTGCCAGGAATGTT
TCAAAGGACGAGTATACCAGAATTGAGAGTGAGAAGCAAAAGGAGATCCCACCAAACATT
CGCCATTTATCTATATCTGCACATTTGTGGGCCGGTATGAAGAAAACAGAGATGAAAAAC
CTGCGCACGTTACTTGTTTGGAGCAAATCATGGCCTTGCTGGAAATTGTCCCTTCCAAAT
GATGTGTTCAAGAAATCCAAATACATCCGAGTGCTAGATTTGACTGGTTGTTGCCTGGAG
AGGTTGCCAACATCAGTGAAAAATTTGAAGCATTTGCGCTATCTTGCTTTTAGGGTTCCT
GAAAAACCATTGCCCACAGCATTGGTCCAACTTTATCACCTAGAGGTTCTAGTCACAAGA
GGTCACTCTTGTCGGGGAAGTGAATGTTTCCAACTTCCAACAAACATGAAGAAGAACCTA
CTCAAATTGAGAAAAGCTTACCTTTTCAATGTAGGGGGTGCCACAATATCTGGTTTTGGT
GGACAAACTCTTCTGCATGGCCCAGGGGAATTCCATGTCAAGAAGGAGAGTGGGCACAGA
CTTGGAGAGTTAAAGGAGATGAACAATATCCGAGGAAGATTAAGTGTTAGGTTTCTTGAG
AACGTGGAACATCAGCAACAGGCTGTTGATGCGCACCTAGATTGTAAAGAGCACGTCAAA
CACTTGCAGCTAGAGTGGAGTGACCTTCCAAGGCCTATTACTTCTGAGTTGGATTCTGAT
GTGCTTGAGGCCCTTCGACCTCACCCTGATCTTGACCGGCTGAATATCACAGGTTACAAG
GGACTGAGGTCACCTACTTGGTTTGAGACCAATTGGATGAAAGCACTGACTTCTGTAATC
CTTGAGAATTGCATGGGTTGGGTGCAATTGCCTCCTCTTGGACAGCTTCCTCTACTGGAG
GATCTTGTACTGAGGAACATGCATGCTGTTGGGCAGATAGGTGAAGAATTCTATGGGAAC
GGTGAAATGAAGGGCTTTCCAAAGTTGGAAGAAATAGTATTTGATGGCATGCCCAACTGG
GAGAAATGGTCTGGAATTGAAGATGGTTCATTGCTTCCATGTCTCACAAGACTTTACATA
GCTAAGTGCCCTAAGCTTCAAGAAGCACCACCCTTAAATGCAAGACCAAAAGTTGAAGTG
GCGATAACATCTGATTCCTTACCAAGTTCGTGTCTATTTGACTCCCTAATGGCATCGGCA
TCGTATCTGATCTTACTTGTCAACTGCTGCAGCTTCTTGAGCAGCCTGAATACTGACCAA
CTTAGTCATGTTGAGGAGTTGAACGTGAAGAGCTGCACAGATCCAATGCCAGCTTGTGGA
TTTATCGGACTTAGCTCCCTTAAGGTGCTTAGAATCAGCAACTGTTCAGCGTTACTATCG
TCAGTTTGTGTGGAAGCAGGTGAAGAACTTGACACATGTTTTTTCCCTCAGTCACTAAGT
GAACTTGAAATAGTTGATAGCAATATTCAGTCCAGTTTGCTACCAAGATACTTGCAAGGC
CTAACTAACCTCTCGGTGCTGGTGATTAATAGCTGTGATTCTATGGATTTGCTATCTCTT
GCTTATGGAACCCATCACCTTACTTCTCTAGAAGCCATAATCATTAAAGACTGTATTTTC
CTATCCTCATTGGATGGATTTGAAAATCTGATTGCTCTCAGAAAGTTAGTGGTAGCAGAT
TGTAAAAATTTCTGTTTCTTGCCAGCTGATCTGAATGCATTAATATCTCTCAAAACATTA
GCCATTTATGGGTGCCCTAAGATGAAATTTCTCCCCCAGAATGGCGTACCAGCTTCTCTA
CAGTTAATTTTGCTGTCACTGTTGCATCCAGAGTTAGACAGACAGCTTCAAAGGAGGGAA
GGTACTGAATGGGACAAGATTGCTCATGTTCCTGAAAAGAAACTAGAGGTAGAGCTAATT
GATTTGTTGACACTGTTTCCATCCAGTTCTTTCTGA

Peptide Sequence

PEP ID

Os06t0619000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:24866897:24871171:1 gene:Os06g0619000 transcript:Os06t0619000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os06t0619000-01)
Sequence

MGTELTVTGWFLSPIIREMQDTALSYIRGQFSWEKDQEKDLERLDTILTEILAIVDAIEK
REIKDGNQRKLLRKLKDAIYSAVDVLDSFQYMALKSKVDSQAMVSRVTSSCVYLGKRVVG
TDKFRRKLTDMLKKLDEVKTTADTLFKLVSFDSATAKLLPVTQARVTSPLKEENHIYGRK
DDLDRLRDLLLMQSDSSAPGPSNSCVPVISIIGVGGIGKTSLAQLAFRDERIRASFGLRI
WVCVSDIYDEITLARDILESVTGENYRSVTKLDELKNVLQEKISQKNFFLVLDDVWYDEN
RTNWENELVWDGVLSTLDTGLGGSKILVTTRTNKASELLRAGACLQLGGLNRDDYWMLFK
SCAFGEKHPGLFQELKEIGMQIAERLNGLPLAAKVIGRLLNVDLDSSHWKKVLESDISGD
VMKVLRLSYQHLPIHLQLCFSFCSLFPKNWRFDPRRLTDMWISQGFVQKEDESDNDMNVE
DVAKGYFNDLVQRSFFERSLLDLPIEYVMHDLINDLARNVSKDEYTRIESEKQKEIPPNI
RHLSISAHLWAGMKKTEMKNLRTLLVWSKSWPCWKLSLPNDVFKKSKYIRVLDLTGCCLE
RLPTSVKNLKHLRYLAFRVPEKPLPTALVQLYHLEVLVTRGHSCRGSECFQLPTNMKKNL
LKLRKAYLFNVGGATISGFGGQTLLHGPGEFHVKKESGHRLGELKEMNNIRGRLSVRFLE
NVEHQQQAVDAHLDCKEHVKHLQLEWSDLPRPITSELDSDVLEALRPHPDLDRLNITGYK
GLRSPTWFETNWMKALTSVILENCMGWVQLPPLGQLPLLEDLVLRNMHAVGQIGEEFYGN
GEMKGFPKLEEIVFDGMPNWEKWSGIEDGSLLPCLTRLYIAKCPKLQEAPPLNARPKVEV
AITSDSLPSSCLFDSLMASASYLILLVNCCSFLSSLNTDQLSHVEELNVKSCTDPMPACG
FIGLSSLKVLRISNCSALLSSVCVEAGEELDTCFFPQSLSELEIVDSNIQSSLLPRYLQG
LTNLSVLVINSCDSMDLLSLAYGTHHLTSLEAIIIKDCIFLSSLDGFENLIALRKLVVAD
CKNFCFLPADLNALISLKTLAIYGCPKMKFLPQNGVPASLQLILLSLLHPELDRQLQRRE
GTEWDKIAHVPEKKLEVELIDLLTLFPSSSF

Transcript Sequence

Transcript ID

Os06t0619000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24866897:24871171:1 gene:Os06g0619000 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os06t0619000-01)
Sequence

AATTCTTCTTGATTCTTCTTTGTATTTGGATTTCTTGCTATCAGCAGGAACTCTCTCTCT
CTCTCCAAAATGGGCACTGAATTAACTGTTACAGGATGGTTCTTGTCACCTATTATACGG
GAAATGCAAGATACTGCACTGTCCTACATAAGGGGGCAATTCAGTTGGGAGAAGGATCAA
GAAAAGGACCTTGAGCGTCTTGATACTATCCTTACAGAGATCTTGGCCATCGTGGACGCC
ATCGAGAAGCGGGAGATCAAGGATGGGAATCAGAGGAAGCTGCTCCGGAAGCTCAAGGAT
GCCATTTACAGCGCCGTTGATGTGCTTGACAGCTTCCAGTACATGGCCCTCAAGTCTAAA
GTCGACAGCCAAGCTATGGTGAGTCGCGTTACCTCATCCTGTGTTTACTTGGGTAAGCGC
GTAGTAGGTACTGATAAGTTCCGGAGGAAGCTAACCGATATGTTGAAAAAATTGGATGAG
GTTAAAACAACTGCGGATACCTTGTTCAAATTGGTTAGTTTTGATAGTGCTACTGCAAAG
CTGCTCCCAGTCACACAGGCACGTGTAACGTCTCCTTTGAAGGAAGAGAACCACATATAT
GGTAGAAAAGATGATCTTGATAGGCTGAGAGATTTGTTGCTTATGCAAAGTGATAGTAGT
GCACCTGGACCTAGTAACTCATGTGTTCCTGTTATATCCATCATTGGTGTTGGTGGGATT
GGGAAGACAAGCCTAGCACAATTAGCTTTCAGAGATGAAAGGATACGTGCGAGCTTTGGT
CTCAGGATCTGGGTTTGTGTATCCGATATTTATGATGAGATAACATTGGCAAGGGATATT
TTAGAATCTGTAACAGGTGAAAATTATCGCAGTGTTACTAAATTGGATGAATTGAAGAAT
GTTCTTCAAGAAAAGATAAGTCAAAAGAACTTTTTTCTTGTATTGGATGATGTATGGTAT
GATGAGAACAGGACAAATTGGGAGAATGAATTAGTATGGGACGGAGTTTTATCAACATTG
GATACTGGACTGGGAGGATCCAAAATTCTGGTGACGACTCGAACCAACAAAGCCAGTGAA
CTCCTACGTGCTGGAGCCTGTTTACAATTAGGGGGATTGAATAGAGATGATTACTGGATG
TTATTCAAAAGCTGTGCCTTTGGTGAGAAACATCCAGGACTGTTTCAAGAACTTAAGGAA
ATAGGAATGCAGATTGCTGAAAGATTGAATGGTTTGCCCTTAGCAGCAAAGGTAATCGGT
CGCCTATTGAATGTTGATTTAGATTCAAGTCATTGGAAGAAAGTGCTAGAGAGTGACATA
TCAGGTGATGTTATGAAGGTTCTCAGGTTGAGTTACCAACACTTGCCCATCCACTTGCAA
CTATGCTTCAGCTTCTGCAGCTTATTCCCGAAGAACTGGCGTTTTGATCCCAGGAGGCTT
ACAGACATGTGGATTTCACAGGGTTTTGTTCAGAAGGAGGATGAGTCTGACAATGACATG
AATGTTGAAGATGTTGCGAAGGGCTACTTTAATGATCTTGTACAAAGATCATTCTTCGAG
AGATCTTTGTTAGACCTTCCAATAGAGTATGTCATGCATGACTTGATCAATGACCTTGCC
AGGAATGTTTCAAAGGACGAGTATACCAGAATTGAGAGTGAGAAGCAAAAGGAGATCCCA
CCAAACATTCGCCATTTATCTATATCTGCACATTTGTGGGCCGGTATGAAGAAAACAGAG
ATGAAAAACCTGCGCACGTTACTTGTTTGGAGCAAATCATGGCCTTGCTGGAAATTGTCC
CTTCCAAATGATGTGTTCAAGAAATCCAAATACATCCGAGTGCTAGATTTGACTGGTTGT
TGCCTGGAGAGGTTGCCAACATCAGTGAAAAATTTGAAGCATTTGCGCTATCTTGCTTTT
AGGGTTCCTGAAAAACCATTGCCCACAGCATTGGTCCAACTTTATCACCTAGAGGTTCTA
GTCACAAGAGGTCACTCTTGTCGGGGAAGTGAATGTTTCCAACTTCCAACAAACATGAAG
AAGAACCTACTCAAATTGAGAAAAGCTTACCTTTTCAATGTAGGGGGTGCCACAATATCT
GGTTTTGGTGGACAAACTCTTCTGCATGGCCCAGGGGAATTCCATGTCAAGAAGGAGAGT
GGGCACAGACTTGGAGAGTTAAAGGAGATGAACAATATCCGAGGAAGATTAAGTGTTAGG
TTTCTTGAGAACGTGGAACATCAGCAACAGGCTGTTGATGCGCACCTAGATTGTAAAGAG
CACGTCAAACACTTGCAGCTAGAGTGGAGTGACCTTCCAAGGCCTATTACTTCTGAGTTG
GATTCTGATGTGCTTGAGGCCCTTCGACCTCACCCTGATCTTGACCGGCTGAATATCACA
GGTTACAAGGGACTGAGGTCACCTACTTGGTTTGAGACCAATTGGATGAAAGCACTGACT
TCTGTAATCCTTGAGAATTGCATGGGTTGGGTGCAATTGCCTCCTCTTGGACAGCTTCCT
CTACTGGAGGATCTTGTACTGAGGAACATGCATGCTGTTGGGCAGATAGGTGAAGAATTC
TATGGGAACGGTGAAATGAAGGGCTTTCCAAAGTTGGAAGAAATAGTATTTGATGGCATG
CCCAACTGGGAGAAATGGTCTGGAATTGAAGATGGTTCATTGCTTCCATGTCTCACAAGA
CTTTACATAGCTAAGTGCCCTAAGCTTCAAGAAGCACCACCCTTAAATGCAAGACCAAAA
GTTGAAGTGGCGATAACATCTGATTCCTTACCAAGTTCGTGTCTATTTGACTCCCTAATG
GCATCGGCATCGTATCTGATCTTACTTGTCAACTGCTGCAGCTTCTTGAGCAGCCTGAAT
ACTGACCAACTTAGTCATGTTGAGGAGTTGAACGTGAAGAGCTGCACAGATCCAATGCCA
GCTTGTGGATTTATCGGACTTAGCTCCCTTAAGGTGCTTAGAATCAGCAACTGTTCAGCG
TTACTATCGTCAGTTTGTGTGGAAGCAGGTGAAGAACTTGACACATGTTTTTTCCCTCAG
TCACTAAGTGAACTTGAAATAGTTGATAGCAATATTCAGTCCAGTTTGCTACCAAGATAC
TTGCAAGGCCTAACTAACCTCTCGGTGCTGGTGATTAATAGCTGTGATTCTATGGATTTG
CTATCTCTTGCTTATGGAACCCATCACCTTACTTCTCTAGAAGCCATAATCATTAAAGAC
TGTATTTTCCTATCCTCATTGGATGGATTTGAAAATCTGATTGCTCTCAGAAAGTTAGTG
GTAGCAGATTGTAAAAATTTCTGTTTCTTGCCAGCTGATCTGAATGCATTAATATCTCTC
AAAACATTAGCCATTTATGGGTGCCCTAAGATGAAATTTCTCCCCCAGAATGGCGTACCA
GCTTCTCTACAGTTAATTTTGCTGTCACTGTTGCATCCAGAGTTAGACAGACAGCTTCAA
AGGAGGGAAGGTACTGAATGGGACAAGATTGCTCATGTTCCTGAAAAGAAACTAGAGGTA
GAGCTAATTGATTTGTTGACACTGTTTCCATCCAGTTCTTTCTGACGAGTGTTGTCATTT
TTGGACGTGTGGTATGCCTTCCTGAACCACTCTACTACATTTACTTCAACCGAATAACTA
CTAGTCATGCTCACAAAAACTCATATATGGGCATTACTACCTTTGCAGTTTATCAGTGCC
AAACTGCCAATTCCTGAAGTAGAGGTTGTTTCAAGCTGAATGCTATTTAGACCATTTTGA
ATGGTACGCAACATCTCAACTAGAAAAACTCTAAATGTCGTGTATAATGAACAGATTATA
AAGTGACTATGTCATTTGTTTTC