Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0611400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:24379827:24382168:1 gene:Os06g0611400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os06t0611400-01)
Sequence

ATGACACCTCTGTTACAAATTACCATGTCTTCTCTGATCATCACTAGCTGGTGGTGGCTA
CAGGCTACTTGTACTGCTCGCCAATTAGTCTTCGATGTCAGAGACTTCGGCGCTGTCGCC
GACGGACAGACAGATAATTCCAAGGCGTTTGAGAGGGCGTGGGCGAAGGCGTGCGCGGCG
CCGGGGAGGGCGGCGGTCGTCGTGCCCGCCGCCGGCGGCGGCGGCGGTGGCGGCGGTGGC
TACCTGCTCCACCCGGTGGTGTTCCGGGGACCCTGCAAGGGGTTCGTCGAGGTGCGGGTC
GCCGGCGTCGTCCGCGCGCCGGCCGGCCTCGACGCGTTCCGGGGGTATCACGAGTGGATC
AACTTCGCCGGCATCGACGGCCTGCTCGTCACCGGCGGCGGCACGTTCGACGGCCGCGGC
GCGTCGTCGTGGCACCTCAATGACTGTCCCTGGAAACCGGACTGCGTGCCTCCTCCCTCA
TCCATCAAGCTGGGGAGCGTGAGGAACGCGACCATCACGGGTGTGACGTCACTGGACAGC
AAGTTCTTCCACGTCACCATCGTCGGGAGCCACGACGTGGAGGTGAGCCACGTCAGCATC
CGGGCCCCGCGCGACAGCCCCAACACGGACGGCGTCCACATCCAGGGCTCCACGGGCGTC
CGGATCACCGACACGGCGGTCGCCACCGGCGACGACTGCGTCTCCGTCGGCCCCGGCAGC
GCCGACGTGACGGTGTCCGGCGTGTCGTGCGGCCCCGGGCACGGCATCAGCGTGGGGAGC
CTCGGCCGGAGCCCCGGCGAGGCCGACGTGCGGCGGCTGCGCGTGTCCAACTGCACCATC
GCCGGCACGGCCAACGGCGTGCGGATCAAGACGTGGCGCGGCGGCCAGCGGAGCTCCGCC
GCCGCCGCGGCCGCCGCCGCCGTTTCCGGCCTCGTCTTCGAGGACATCGTCATGAGGAGA
GTCCGCAACCCCATCATCATCGACCAGGAGTACTGCCCCTATCTCTCCTGCCACCATCAA
TCGGAGCGGCGGCCGTCGGTGGTGAGGATCAGCGACGTGAAGTTCAGGAACATCAGGGGG
GTGTCGGCGACGCAGGTGGCGGTGAAGCTGTCGTGCAGCGCGGCGAGCCCGTGCCGAGGG
GTGGAGCTCAGGGACATCGACCTCAGATACGTCAGGCGAGGGGTGGCCACCGTGTCGCGG
TGCGCCAACGTCGCCGGAGGCGTCGCCGGCGGGACGCTTGTGCCGCCCCCTTGCATATGA

Peptide Sequence

PEP ID

Os06t0611400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:24379827:24382168:1 gene:Os06g0611400 transcript:Os06t0611400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os06t0611400-01)
Sequence

MTPLLQITMSSLIITSWWWLQATCTARQLVFDVRDFGAVADGQTDNSKAFERAWAKACAA
PGRAAVVVPAAGGGGGGGGGYLLHPVVFRGPCKGFVEVRVAGVVRAPAGLDAFRGYHEWI
NFAGIDGLLVTGGGTFDGRGASSWHLNDCPWKPDCVPPPSSIKLGSVRNATITGVTSLDS
KFFHVTIVGSHDVEVSHVSIRAPRDSPNTDGVHIQGSTGVRITDTAVATGDDCVSVGPGS
ADVTVSGVSCGPGHGISVGSLGRSPGEADVRRLRVSNCTIAGTANGVRIKTWRGGQRSSA
AAAAAAAVSGLVFEDIVMRRVRNPIIIDQEYCPYLSCHHQSERRPSVVRISDVKFRNIRG
VSATQVAVKLSCSAASPCRGVELRDIDLRYVRRGVATVSRCANVAGGVAGGTLVPPPCI

Transcript Sequence

Transcript ID

Os06t0611400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24379827:24382168:1 gene:Os06g0611400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os06t0611400-01)
Sequence

TTTGCTTCTCAGTTTTGACACACAAACAGTATGACACCTCTGTTACAAATTACCATGTCT
TCTCTGATCATCACTAGCTGGTGGTGGCTACAGGCTACTTGTACTGCTCGCCAATTAGTC
TTCGATGTCAGAGACTTCGGCGCTGTCGCCGACGGACAGACAGATAATTCCAAGGCGTTT
GAGAGGGCGTGGGCGAAGGCGTGCGCGGCGCCGGGGAGGGCGGCGGTCGTCGTGCCCGCC
GCCGGCGGCGGCGGCGGTGGCGGCGGTGGCTACCTGCTCCACCCGGTGGTGTTCCGGGGA
CCCTGCAAGGGGTTCGTCGAGGTGCGGGTCGCCGGCGTCGTCCGCGCGCCGGCCGGCCTC
GACGCGTTCCGGGGGTATCACGAGTGGATCAACTTCGCCGGCATCGACGGCCTGCTCGTC
ACCGGCGGCGGCACGTTCGACGGCCGCGGCGCGTCGTCGTGGCACCTCAATGACTGTCCC
TGGAAACCGGACTGCGTGCCTCCTCCCTCATCCATCAAGCTGGGGAGCGTGAGGAACGCG
ACCATCACGGGTGTGACGTCACTGGACAGCAAGTTCTTCCACGTCACCATCGTCGGGAGC
CACGACGTGGAGGTGAGCCACGTCAGCATCCGGGCCCCGCGCGACAGCCCCAACACGGAC
GGCGTCCACATCCAGGGCTCCACGGGCGTCCGGATCACCGACACGGCGGTCGCCACCGGC
GACGACTGCGTCTCCGTCGGCCCCGGCAGCGCCGACGTGACGGTGTCCGGCGTGTCGTGC
GGCCCCGGGCACGGCATCAGCGTGGGGAGCCTCGGCCGGAGCCCCGGCGAGGCCGACGTG
CGGCGGCTGCGCGTGTCCAACTGCACCATCGCCGGCACGGCCAACGGCGTGCGGATCAAG
ACGTGGCGCGGCGGCCAGCGGAGCTCCGCCGCCGCCGCGGCCGCCGCCGCCGTTTCCGGC
CTCGTCTTCGAGGACATCGTCATGAGGAGAGTCCGCAACCCCATCATCATCGACCAGGAG
TACTGCCCCTATCTCTCCTGCCACCATCAATCGGAGCGGCGGCCGTCGGTGGTGAGGATC
AGCGACGTGAAGTTCAGGAACATCAGGGGGGTGTCGGCGACGCAGGTGGCGGTGAAGCTG
TCGTGCAGCGCGGCGAGCCCGTGCCGAGGGGTGGAGCTCAGGGACATCGACCTCAGATAC
GTCAGGCGAGGGGTGGCCACCGTGTCGCGGTGCGCCAACGTCGCCGGAGGCGTCGCCGGC
GGGACGCTTGTGCCGCCCCCTTGCATATGAAAATCTGTTTTCTGTTTTTTTTTCTTTTTT
CACTTTCTTGTTTTCTTTCTATATAGCGTACAGTCACAGAGAGTTGGCGTGGACGAAATT
TTGGTTCTTGTAAACGACCGATGACGAGATTGATCCTTAATTATGGGGACATCTTGTTCT
CCCCTGTAATGGAAC