Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0609500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:24268909:24273342:1 gene:Os06g0609500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os06t0609500-01)
Sequence

ATGTATGAACCAAAGCCCTTCTCAAGCATTGTACTAGCTCACAACGATCCAGTTTCCCAC
AATCAACAAATTGAACGTATTAACAACAATGTAGTATCTAATAGTGGTGGGAACAGCTCA
AACAGCAACTTTGCCGCCAGACAGCGCTTACGGTGGACTGATGACCTCCATGATCGTTTT
GTGGATGCTGTAACACAGCTTGGTGGACCCGACAGGGCAACTCCGAAGGGAATTCTTAGA
ATAATGGGTGTTCAAGGGTTGACCATCTATCATGTCAAAAGCCATCTGCAAAAATATCGG
CTTGCTAAATACATTCCAGATCCCACAGCTGATGGTGCCAAGTCTGACAAGAAAGATCTC
GGAGATTTGCTTGCTGACATTGAAAGCTCCTCGGGAATGGAAATAGGGGAGGCTTTAAAG
TTGCAGATGGAGGTGCAAAAGCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAG
CTCCGGATAGAAGCCCAAGGAAGGTACCTCCAGAAGATCATTGAGGAGCAGCAGCGGCTC
AGTGGTGTGCTGGGTGAATCAGGCAAGTTAGGCGCCCTGGGACCAGCTCCAGGGGAGCCA
TACCAGGATTCCAACAAAACCGACCCCTCGACCCCGGTACCGACTTCCGAATCCCCAATC
CGCGACAAGGCTGGAAGCGGCTTGTTCAAGACCATTTCTTCGCACGACGACTGCCGCGAG
CCTTTGACACCGGACTCCAGCTGCCGTGCCGGCTCCCCTTTGGAGAGCCCCCCCAGGGCT
AGCAAGAGGATCCGGGTCAGCAGCGACATTGATCATCGTGGGAACAATGAGTTCCCCCCT
CCTCTCAAAGTTCCGGAGCCAAGTTCAGGTTCAGATTTCCGACAGGAAAGCTCAGTGTTA
TTATCATCCAGCGCAGTGCACTTCGATTCTTTGGAGAGCCTGGATGCAGATGAAAATGTC
TTCACCAATGGTTCAGGCAGTGATGATTGA

Peptide Sequence

PEP ID

Os06t0609500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:24268909:24273342:1 gene:Os06g0609500 transcript:Os06t0609500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os06t0609500-01)
Sequence

MYEPKPFSSIVLAHNDPVSHNQQIERINNNVVSNSGGNSSNSNFAARQRLRWTDDLHDRF
VDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRLAKYIPDPTADGAKSDKKDL
GDLLADIESSSGMEIGEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGRYLQKIIEEQQRL
SGVLGESGKLGALGPAPGEPYQDSNKTDPSTPVPTSESPIRDKAGSGLFKTISSHDDCRE
PLTPDSSCRAGSPLESPPRASKRIRVSSDIDHRGNNEFPPPLKVPEPSSGSDFRQESSVL
LSSSAVHFDSLESLDADENVFTNGSGSDD

Transcript Sequence

Transcript ID

Os06t0609500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24268909:24273342:1 gene:Os06g0609500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os06t0609500-01)
Sequence

AGGAAGGAAAGAAACCTAAGCCCATCGGAAATCTCTCCTCCTCCCAGCAAAGAGGAGGTG
GTGGAGATCTCCCAATCCGCGGGAATCACTCGCTGTTCACCCCGATTCGGCCTCCGCTCG
AGCTCTGAATCTCGGGAGCTCCTGATCTGGAGGATGCCAAATGTATGAACCAAAGCCCTT
CTCAAGCATTGTACTAGCTCACAACGATCCAGTTTCCCACAATCAACAAATTGAACGTAT
TAACAACAATGTAGTATCTAATAGTGGTGGGAACAGCTCAAACAGCAACTTTGCCGCCAG
ACAGCGCTTACGGTGGACTGATGACCTCCATGATCGTTTTGTGGATGCTGTAACACAGCT
TGGTGGACCCGACAGGGCAACTCCGAAGGGAATTCTTAGAATAATGGGTGTTCAAGGGTT
GACCATCTATCATGTCAAAAGCCATCTGCAAAAATATCGGCTTGCTAAATACATTCCAGA
TCCCACAGCTGATGGTGCCAAGTCTGACAAGAAAGATCTCGGAGATTTGCTTGCTGACAT
TGAAAGCTCCTCGGGAATGGAAATAGGGGAGGCTTTAAAGTTGCAGATGGAGGTGCAAAA
GCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAGCTCCGGATAGAAGCCCAAGG
AAGGTACCTCCAGAAGATCATTGAGGAGCAGCAGCGGCTCAGTGGTGTGCTGGGTGAATC
AGGCAAGTTAGGCGCCCTGGGACCAGCTCCAGGGGAGCCATACCAGGATTCCAACAAAAC
CGACCCCTCGACCCCGGTACCGACTTCCGAATCCCCAATCCGCGACAAGGCTGGAAGCGG
CTTGTTCAAGACCATTTCTTCGCACGACGACTGCCGCGAGCCTTTGACACCGGACTCCAG
CTGCCGTGCCGGCTCCCCTTTGGAGAGCCCCCCCAGGGCTAGCAAGAGGATCCGGGTCAG
CAGCGACATTGATCATCGTGGGAACAATGAGTTCCCCCCTCCTCTCAAAGTTCCGGAGCC
AAGTTCAGGTTCAGATTTCCGACAGGAAAGCTCAGTGTTATTATCATCCAGCGCAGTGCA
CTTCGATTCTTTGGAGAGCCTGGATGCAGATGAAAATGTCTTCACCAATGGTTCAGGCAG
TGATGATTGATTTTTCATCTGTGTAGGGGCAGGGCAGTGATGTTTAGAGGACTTGCTAGT
TATCTCTTCAGTAGAGCTGTTGATCTTAGTGAGGCTGTAATGCTGTAAACCCAGCCATGA
CTGTTAGTTGTTATCTACTGTTCAGTGCATGTTTGTAGCTTATACTTATTCAATCAGAGA
TGTGCAGTGTGCACATCACTTTACAGTTCATGTAGGTCTGGAAATGTAGTAAGGTGAGAA
GAACATAAAGATATGATCTTATTTTCGTTGAGCATGCAACTG