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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0608500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:24218379:24223089:1 gene:Os06g0608500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNF7 component of ESCRT-III complex, ESCRT-III complex SNF7 component description:Snf7 family protein. (Os06t0608500-01)
Sequence

ATGTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCG
CTGGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTG
CTAGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAAT
AAAAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAG
CTTGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCT
ACAACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAA
GCGACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAAT
ATGAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAA
GATGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTA
GCACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCT
GCCCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATG
TAA

Peptide Sequence

PEP ID

Os06t0608500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:24218379:24223089:1 gene:Os06g0608500 transcript:Os06t0608500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNF7 component of ESCRT-III complex, ESCRT-III complex SNF7 component description:Snf7 family protein. (Os06t0608500-01)
Sequence

MSGVFGKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKN
KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHK
ATNIDDVDKTMDEINDNMENMRQIQDLLSAPIGAAADFDEDELEAELADLEGEELEAELL
APTTTAPTAPVRVQQPTRPSAQSSKTEDDELAALQAEMAM

Transcript Sequence

Transcript ID

Os06t0608500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24218379:24223089:1 gene:Os06g0608500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNF7 component of ESCRT-III complex, ESCRT-III complex SNF7 component description:Snf7 family protein. (Os06t0608500-01)
Sequence

ATGCCGGTAACGACTCCCACCACCGCATCCTCCCCGCTTTTCCCACTCCCAACCACGACC
GCGGCCGGCCGGCGAATCGCCTCGATTCCGGCGTGCGAATTCCTCCACCTCGCCGCCGCC
GCTGCTCGCGACCGATCTTCACCTTCCGCTTCCCCCCCCCTGCAGCCGATTGGACTCGAT
CCTATCCTATCCTATCCTATCCCCGAACGGGCGATCTGGTAGGCGAGAGAGACCAGCCAT
GTCGGGGGTGTTCGGCAAGGTGTTCGGGAAGTCCAAGGCGCAGAGCCAGGCCACCGCGCT
GGCCTCCATCGACAAGCTCAGCGAGACTCTTGAAATGCTGGAAAAGAAAGAAAATTTGCT
AGTGAAGAAAGCGAATCTTGAGGTTGAGAAGGCCAAGACCTTCACTAAAGCGAAGAATAA
AAGAGCTGCAATACAATGCTTAAAGAGGAAGAGATTATATGAGCAACAGATTGAGCAGCT
TGGTAATTTCCAATTAAGGATACATGATCAGATGATAATGCTGGAAGGTGCAAAGGCTAC
AACAGAGACTGTTGATGCATTGAGAACTGGAGCATCGGCGATGAAAGCAATGCACAAAGC
GACAAATATTGACGACGTTGACAAGACAATGGATGAAATTAATGACAATATGGAGAATAT
GAGGCAGATCCAGGATCTACTATCTGCTCCTATTGGAGCTGCAGCTGATTTTGATGAAGA
TGAGCTGGAAGCTGAATTAGCAGATCTGGAGGGGGAGGAATTGGAGGCAGAGCTTCTAGC
ACCTACAACGACTGCCCCTACTGCTCCAGTGCGTGTACAGCAACCAACTCGGCCTTCTGC
CCAGAGCAGCAAAACTGAAGATGACGAGTTGGCAGCTTTGCAGGCAGAGATGGCTATGTA
ATTAGTTTTGCAGGCTTTGATAGGGTCATGCCAAAAGATCAGATACTTCAAATACTCCTA
TATTGGACTCTGGTGTACTCATGAAGATCTTCCTAGGAAGATGTCAGAGACACAGAAGCA
AGCTGCATGCCAGCCTAACCCGTTATGTATGGTATCATGTCATGTTACTGCCTTGTAAAT
CAAACAGAGCTATTTGAGCACATTATGAGCTAATAAAATGTACTACCCGTGATGGCGTC