Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0608300-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:24206659:24212569:-1 gene:Os06g0608300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Small nuclear ribonucleoprotein component. (Os06t0608300-01);Similar to U5 small nuclear ribonucleoprotein component. (Os06t0608300-02)
Sequence	ATGGACGACAGCCTCTACGACGAGTTCGGCAACTACATCGGCCCGGAGCTCGCCGACTCC GACGCCGATGACTCCGACGCGGACGCCTCCCCGTCCCCCTCCCCGTCCCGCTCCCCTTCC CCCTCCGCGCGCTCCCCGTCGGGCTCCCCCTCCCGCCCCGCCGCTCTCATGGACGTCGAC GGCGGCGACGACGACGACGACGCCGACCCGTCCCAGAGCGCCGTCGTCCTCGCCGAGGAC AAGAAGTACTACCCCACCGCCGAGGAGGTGTACGGGCCCGGCGTGGAGGCGCTCGTCATG GACGAGGATGAGCAGCCGCTAGAGCAGCCCATCGTCGCGCCCCCACGCGTCGTGAGGTTC GAGGTCGGCACCCGCGCGGAGGCCACCTCCACCTACGCCACCACCGACTTCCTCCTCGGC CTCGCCGCCAACCCGGCGCTGGTGCGCAACGTCGCGCTCGTGGGCCACCTGCAGCACGGG AAGACGGTGTTCATGGACATGCTCGTGGAGCAGACCCACGAGGTGGACACCTTCGACTCC GAGGGCGAGCGCCATGTGAGGTTCACCGACACCCGGGTGGATGAGCAGGAGCGGCGGGTG TCCATCAAGGCCGTGCCCATGTCCCTTGTGCTTGAGGGAGGGAATGGCAAGTCATACCTG TGCAATATCATGGACACACCTGGGCATGTCAATTTTTCCGATGAGATGACTGCCGCGTTG CGGATCGCTGATGGGGCTGTGCTTGTTGTCGATGCTGCCGAGGGTGTTATGGTAAATACA GAGAGGGCGATTCGTCACGCAACACAAGAAAGACTCCCCATTGTTGTCGTGATTAACAAG GTTGATAGATTGATTACAGAGCTAAAGCTGCCACCTAATGATGCATATTTCAAGCTACGG CATACACTGGAGGCGATCAATGATCTCATCTCGTCTTGTTCTACCACAGTAGGTGGCACT CAACTGGTTGATCCTGCTGCTGGAAATGTTTGTTTTGCAAGTGGTTCTGCAGGCTGGTCT TTTACCTTGCAATCTTTTGCTCATCTTTATTTAAAGATCCATGGGATTCAATTTGATCAT GAGAAATTTGCATCGCGTCTATGGGGAGACCTATATTATCACCCTGACACTAGAACCTTC AAAAAGAAGCCTCCAAAGGAAGGAGCTAATAGATCATTTGTTGAGTTTGTCCTTGAACCT TTGTACAAAATATATAGTCAGGTTGTTGGGGAGTCAAAGGGTAAGGTTGAAGCAACTCTT TCTGAGCTGGGTGTGACGCTGAGCAATGCAGCTTATAAGCTTAATGTTAGGCCTTTGCTG AGATTAGCTTGTCGCTCAATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAA CACATACCCTCTGTCAAGGATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCA CAAGATTCCACTATTGTGGATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTT AATGTTACAAAGTTGTATCCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTT TATAGTGGCACAATACAGACTGGGCAAACTGTGCGTGTTCTTGGAGAAGGCTATTCTCCT GATGATGAAGAAGATATGACTGTGAAAGAGGTTACTAAGTTGTGGGTGTATCAGGCACGG TACCGTGTTCCAATTAGTAAAGCCCCTGCTGGTTCTTGGGTTCTTATTGAAGGTGTAGAT GCATCAATTATGAAAACTGCAACTATATGTCCTATGAAGATGGATGAAGATGTCTACATA TTTAGACCTCTACGTTTCAATACTCTACCTGTCGTGAAAATAGCAGCTGAGCCTCTAAAC CCAAGTGAGCTCCCTAAGATGGTGGAAGGTCTTCGTAAAATCAGTAAGAGTTATCCTCTT GCTGTTACTAAGGTGGAAGAGTCTGGAGAACACACTATCCTTGGGACTGGTGAGCTTTAT CTAGATTCTATAATGAAGGACCTCAGAGAGCTTTACTCTGAGGTAGAAGTGAAGGTTGCA GATCCAGTCGTGACATTTTGTGAAACAGTTGTTGATACTTCTTCGATGAAATGCTTTGCT GAAACACCCAACAAGAGGAACAAAATTACCATGGTTGCTGAACCATTGGAAAAGGGCTTG GCTGAAGATATTGAGAACGGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGAC TTCTTTCGTCAACGCTACCAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGG CCTGAAAAGCAGGGTCCTAACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAA AACTTGCTCAATGCAGTCAAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAA GGTCCGCTGTGTGATGAACCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATA GCTCCTGAACCGTTGCACCGTGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTT TACTCAGCGTTCCTAATGGCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATC CAAACACCAATTGACTGTGTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCAT GTAACAGCGGATGTACCCAAACCAGGAACTCCAATCTATGTTGTTAAGGCATTTTTACCT GTTATAGAGTCATTTGGATTTGAGACCGACCTGAGGTACCATACACAGGGACAGGCCTTT TGCCTATCAGTGTTCGATCACTGGGCTATTGTTCCTGGTGACCCTTTAGACAAGAATATT GTCCTCCGGCCTCTGGAACCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAG ACTAGGCGAAGGAAGGGCATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCC ATGATGAACGAGCTGGCGCAGCAGGCTGCTGATCTCCATCTTCAAATGATGTAG

Peptide Sequence

PEP ID	Os06t0608300-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:24206659:24212569:-1 gene:Os06g0608300 transcript:Os06t0608300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Small nuclear ribonucleoprotein component. (Os06t0608300-01);Similar to U5 small nuclear ribonucleoprotein component. (Os06t0608300-02)
Sequence	MDDSLYDEFGNYIGPELADSDADDSDADASPSPSPSRSPSPSARSPSGSPSRPAALMDVD GGDDDDDADPSQSAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQPLEQPIVAPPRVVRF EVGTRAEATSTYATTDFLLGLAANPALVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDS EGERHVRFTDTRVDEQERRVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAAL RIADGAVLVVDAAEGVMVNTERAIRHATQERLPIVVVINKVDRLITELKLPPNDAYFKLR HTLEAINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYLKIHGIQFDH EKFASRLWGDLYYHPDTRTFKKKPPKEGANRSFVEFVLEPLYKIYSQVVGESKGKVEATL SELGVTLSNAAYKLNVRPLLRLACRSIFGTSTGFTDMLVKHIPSVKDAAPRKIEHIYTGP QDSTIVDAMKKCDPHAPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSP DDEEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMKMDEDVYI FRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELY LDSIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGL AEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPEKQGPNILLDDTLSVEVDK NLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVV YSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLP VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVK TRRRKGMSEDVSINKFFDEAMMNELAQQAADLHLQMM

Transcript Sequence

Transcript ID	Os06t0608300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:24206659:24212569:-1 gene:Os06g0608300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Small nuclear ribonucleoprotein component. (Os06t0608300-01);Similar to U5 small nuclear ribonucleoprotein component. (Os06t0608300-02)
Sequence	ATCTTCCCCTTTCCACCCAAATCCCAAACCTCCCCCCTCCCCGCGCCGGCGCCCAAAACC CTAGCCGGCAAGGCCCCTCCCTCTCCGATCTCGCCGGCCGCCGCCATGGACGACAGCCTC TACGACGAGTTCGGCAACTACATCGGCCCGGAGCTCGCCGACTCCGACGCCGATGACTCC GACGCGGACGCCTCCCCGTCCCCCTCCCCGTCCCGCTCCCCTTCCCCCTCCGCGCGCTCC CCGTCGGGCTCCCCCTCCCGCCCCGCCGCTCTCATGGACGTCGACGGCGGCGACGACGAC GACGACGCCGACCCGTCCCAGAGCGCCGTCGTCCTCGCCGAGGACAAGAAGTACTACCCC ACCGCCGAGGAGGTGTACGGGCCCGGCGTGGAGGCGCTCGTCATGGACGAGGATGAGCAG CCGCTAGAGCAGCCCATCGTCGCGCCCCCACGCGTCGTGAGGTTCGAGGTCGGCACCCGC GCGGAGGCCACCTCCACCTACGCCACCACCGACTTCCTCCTCGGCCTCGCCGCCAACCCG GCGCTGGTGCGCAACGTCGCGCTCGTGGGCCACCTGCAGCACGGGAAGACGGTGTTCATG GACATGCTCGTGGAGCAGACCCACGAGGTGGACACCTTCGACTCCGAGGGCGAGCGCCAT GTGAGGTTCACCGACACCCGGGTGGATGAGCAGGAGCGGCGGGTGTCCATCAAGGCCGTG CCCATGTCCCTTGTGCTTGAGGGAGGGAATGGCAAGTCATACCTGTGCAATATCATGGAC ACACCTGGGCATGTCAATTTTTCCGATGAGATGACTGCCGCGTTGCGGATCGCTGATGGG GCTGTGCTTGTTGTCGATGCTGCCGAGGGTGTTATGGTAAATACAGAGAGGGCGATTCGT CACGCAACACAAGAAAGACTCCCCATTGTTGTCGTGATTAACAAGGTTGATAGATTGATT ACAGAGCTAAAGCTGCCACCTAATGATGCATATTTCAAGCTACGGCATACACTGGAGGCG ATCAATGATCTCATCTCGTCTTGTTCTACCACAGTAGGTGGCACTCAACTGGTTGATCCT GCTGCTGGAAATGTTTGTTTTGCAAGTGGTTCTGCAGGCTGGTCTTTTACCTTGCAATCT TTTGCTCATCTTTATTTAAAGATCCATGGGATTCAATTTGATCATGAGAAATTTGCATCG CGTCTATGGGGAGACCTATATTATCACCCTGACACTAGAACCTTCAAAAAGAAGCCTCCA AAGGAAGGAGCTAATAGATCATTTGTTGAGTTTGTCCTTGAACCTTTGTACAAAATATAT AGTCAGGTTGTTGGGGAGTCAAAGGGTAAGGTTGAAGCAACTCTTTCTGAGCTGGGTGTG ACGCTGAGCAATGCAGCTTATAAGCTTAATGTTAGGCCTTTGCTGAGATTAGCTTGTCGC TCAATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAACACATACCCTCTGTC AAGGATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCACAAGATTCCACTATT GTGGATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTTAATGTTACAAAGTTG TATCCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTTTATAGTGGCACAATA CAGACTGGGCAAACTGTGCGTGTTCTTGGAGAAGGCTATTCTCCTGATGATGAAGAAGAT ATGACTGTGAAAGAGGTTACTAAGTTGTGGGTGTATCAGGCACGGTACCGTGTTCCAATT AGTAAAGCCCCTGCTGGTTCTTGGGTTCTTATTGAAGGTGTAGATGCATCAATTATGAAA ACTGCAACTATATGTCCTATGAAGATGGATGAAGATGTCTACATATTTAGACCTCTACGT TTCAATACTCTACCTGTCGTGAAAATAGCAGCTGAGCCTCTAAACCCAAGTGAGCTCCCT AAGATGGTGGAAGGTCTTCGTAAAATCAGTAAGAGTTATCCTCTTGCTGTTACTAAGGTG GAAGAGTCTGGAGAACACACTATCCTTGGGACTGGTGAGCTTTATCTAGATTCTATAATG AAGGACCTCAGAGAGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTCGTGACA TTTTGTGAAACAGTTGTTGATACTTCTTCGATGAAATGCTTTGCTGAAACACCCAACAAG AGGAACAAAATTACCATGGTTGCTGAACCATTGGAAAAGGGCTTGGCTGAAGATATTGAG AACGGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGACTTCTTTCGTCAACGC TACCAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGGCCTGAAAAGCAGGGT CCTAACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAAAACTTGCTCAATGCA GTCAAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAAGGTCCGCTGTGTGAT GAACCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATAGCTCCTGAACCGTTG CACCGTGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTTTACTCAGCGTTCCTA ATGGCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATCCAAACACCAATTGAC TGTGTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCATGTAACAGCGGATGTA CCCAAACCAGGAACTCCAATCTATGTTGTTAAGGCATTTTTACCTGTTATAGAGTCATTT GGATTTGAGACCGACCTGAGGTACCATACACAGGGACAGGCCTTTTGCCTATCAGTGTTC GATCACTGGGCTATTGTTCCTGGTGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTG GAACCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAG GGCATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCCATGATGAACGAGCTG GCGCAGCAGGCTGCTGATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGA TTGGTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACACT GGGAACTGGAATCAACCTTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCT GCTGCGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGGTTTTGGTA GACGGGAGTCCCATCTATTTCATCTTTATGTATGATCTCTTCCTGTAACATTTTCATCAT CTAACCTTATCAGTTTTAGTTAGCCATTCGGAACTGGAGATAAGTTTTGAGGGGCGATGA TATCATCTAATCTGGATTGCAGCATGGATGGTGTAATGACTGATGTGATCCTTTTGTCCT TGTCCATTGTTCCATCTAATGTACTACAAGTAGCATTCT