Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0607000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:24127167:24130368:1 gene:Os06g0607000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-1,3-glucanase. (Os06t0607000-01)
Sequence

TTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTTCTTGGTGAATCCG
TGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGCGGAGCGGTGGTCC
GTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGAGGCTACCACCACC
ACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGCGACGTTGATGATG
ATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCTGCTGCTCTTCTGC
CTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTTTCCCGGGGGCTAT
GGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAAAGTAGTACAACTC
CTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCACAGCGTTCTTGAT
GCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGAGCTCGTGAAGGAT
TTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGTGCAGCCCTATCTT
CCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGGAGGTCAAGATACA
AGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGGACTCAAGAAATTT
CACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGTTTTTGCTACTTCA
TATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATATGAAACCACTGCTG
GACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCCCTTTTTGGCCTAC
ATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCCCAATCCTGGAATT
GTTGACCCGAATACTAGTCTGCATTATGATAACATGTTCGATGCTCAGATAGATGCAGCT
TATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGC
TGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGAATGCAAGGACTTAC
AATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCCAAAGAGA
CCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGCCTGGACCTAGCTCG
GAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAG
GGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGG
GGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTA
GTGACTTGA

Peptide Sequence

PEP ID

Os06t0607000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:24127167:24130368:1 gene:Os06g0607000 transcript:Os06t0607000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-1,3-glucanase. (Os06t0607000-01)
Sequence

LVGGGRDPVLADSLPFLVNPWRRRRAKIARRCSAVAERWSVYGTCRRGAMPRPGTEATTT
TTSGCEADCGVPAMKATLMMMSCRSRSRSGRAHWMLLLFCLLLAFPSHGPRAVEAFPGGY
GINYGRIANNIPSPDKVVQLLRASKIRNVKIYDSDHSVLDAFKGSGLNLVIAIPNELVKD
FAANESRSIDWLNENVQPYLPQTRIVGITVGNEVLGGQDTSLAEPLVQAVKNVYNGLKKF
HLQDKIELFTPHSEAVFATSYPPSACVFKEDVMVYMKPLLDFFQQIGSPFYVNAYPFLAY
ISDPEHIDINYALFKPNPGIVDPNTSLHYDNMFDAQIDAAYAALQAAGYRDMEVRVAETG
WASSGDQTEAGASVENARTYNFNLRKRLFLRKGTPLKPKRPVKAYIFALFNENSKPGPSS
ERHYGLFNADGRIAYDIGYEGLLPSSAPSYFLSLRKIQAGGWIVHYSATVILSVFIFLAL
VT

Transcript Sequence

Transcript ID

Os06t0607000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24127167:24130368:1 gene:Os06g0607000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-1,3-glucanase. (Os06t0607000-01)
Sequence

AACCCCCCGCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAAT
TCCCAAACCCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCAC
CCCCGGAGTCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCC
CCCCCCCAATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTC
TTGCTTGCTTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAG
AAGAGTGGAGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGT
TGTGGACTATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGG
TGGTGGTGGTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCT
TTACCGTTCTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCG
GCCGTGGCGGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCT
GGAACTGAGGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCT
ATGAAGGCGACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCAC
TGGATGCTGCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTG
GAAGCGTTTCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCT
CCGGATAAAGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGAT
TCCGATCACAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATC
CCCAATGAGCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAAT
GAGAATGTGCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAG
GTGCTGGGAGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTC
TATAATGGACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCA
GAAGCTGTTTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATG
GTGTATATGAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAAC
GCATATCCCTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTC
TTCAAGCCCAATCCTGGAATTGTTGACCCGAATACTAGTCTGCATTATGATAACATGTTC
GATGCTCAGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAG
GTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCA
GTTGAGAATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGA
ACTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAAT
TCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATT
GCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCT
CTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCT
GTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATA
CAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAA
TAGCTCCCTTCGCACCAGTTCTT