Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0606700-00
CDS Infomation

cds chromosome:IRGSP-1.0:6:24089944:24091422:1 gene:Os06g0606700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os06t0606700-00)
Sequence

ATGCTGCTGCGGAGCGCGTCGTCGCCGCTGCTCGGCCACGCCGCCTGCGCGTCGGCGGCG
GAGCATGTCGGGGCGGTGGTGGTGGTGGTGCCCGTGTCGCCGGCGGCGGCGAGGCAGCGG
GGCCCGCCGCTGTGCCGCGCGACGTCCGAGGGGGACCTGATGGCGGCGGTGAGTGCGCGG
CCGCGGGCGCTGTCCGTGGCCTCGTCGGCGTCCATCTCCGTCGAGGAGGAGGTTGAAGAA
GAGGAGGAGGAGGAGGAGGATGTGCTCGGGGCGGCCGTGCCGCTGCGGCGGCTGCTGACG
AGCACCGGGCTGGACGCGGACACGGGGAGGGGGAGGGAGGGCGACGCGGCGGTCGTCGAG
GAGGGCGTCGGGGGAGGAGGCGGCGGGAGGAAGGTGTGCAACGGCGGCGGCGGCGGCAGC
GGGGGGAAGGGCGACGGCGGCCGCCGCGACGCCGACGCGCACTACCGGCGTATGATCCAG
GCCGACCCGGCGAACCCGCTGCTGCTCGGCAACTACGCGAGGTTCCTCAAGGAGGTGGAG
GGCGACGCGGCGAGGGCGCAGGAGTACTGCGAGCGCGCCATCGTCGCCAACCCCGGCGAC
GGCGACGCCCTCGCGCTCTACGCGGGCCTCGTCTGGGAGACCACCCGCGACGCCGACCGC
GCCGACGCCTACTTCACCCGCGCCGTCCACGCCGCCCCCGACGACTGCTACGTCCTCGGC
TCCTACGCCGGCTTCCTCTGGGACGCCGAGGAAGACGATGACGACCACGGCGGCGAGCAG
CCGCCGCCGCCGTTCATGGGGGCAGCTCAGCCTCCTTCCATCACAGCGGCGTCTTGA

Peptide Sequence

PEP ID

Os06t0606700-00
PEP Infomation

pep chromosome:IRGSP-1.0:6:24089944:24091422:1 gene:Os06g0606700 transcript:Os06t0606700-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os06t0606700-00)
Sequence

MLLRSASSPLLGHAACASAAEHVGAVVVVVPVSPAAARQRGPPLCRATSEGDLMAAVSAR
PRALSVASSASISVEEEVEEEEEEEEDVLGAAVPLRRLLTSTGLDADTGRGREGDAAVVE
EGVGGGGGGRKVCNGGGGGSGGKGDGGRRDADAHYRRMIQADPANPLLLGNYARFLKEVE
GDAARAQEYCERAIVANPGDGDALALYAGLVWETTRDADRADAYFTRAVHAAPDDCYVLG
SYAGFLWDAEEDDDDHGGEQPPPPFMGAAQPPSITAAS

Transcript Sequence

Transcript ID

Os06t0606700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:24089944:24091422:1 gene:Os06g0606700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os06t0606700-00)
Sequence

GGAGACGAGAGATCGGGGCGAAGGCGATGCTGCTGCGGAGCGCGTCGTCGCCGCTGCTCG
GCCACGCCGCCTGCGCGTCGGCGGCGGAGCATGTCGGGGCGGTGGTGGTGGTGGTGCCCG
TGTCGCCGGCGGCGGCGAGGCAGCGGGGCCCGCCGCTGTGCCGCGCGACGTCCGAGGGGG
ACCTGATGGCGGCGGTGAGTGCGCGGCCGCGGGCGCTGTCCGTGGCCTCGTCGGCGTCCA
TCTCCGTCGAGGAGGAGGTTGAAGAAGAGGAGGAGGAGGAGGAGGATGTGCTCGGGGCGG
CCGTGCCGCTGCGGCGGCTGCTGACGAGCACCGGGCTGGACGCGGACACGGGGAGGGGGA
GGGAGGGCGACGCGGCGGTCGTCGAGGAGGGCGTCGGGGGAGGAGGCGGCGGGAGGAAGG
TGTGCAACGGCGGCGGCGGCGGCAGCGGGGGGAAGGGCGACGGCGGCCGCCGCGACGCCG
ACGCGCACTACCGGCGTATGATCCAGGCCGACCCGGCGAACCCGCTGCTGCTCGGCAACT
ACGCGAGGTTCCTCAAGGAGGTGGAGGGCGACGCGGCGAGGGCGCAGGAGTACTGCGAGC
GCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTCGCGCTCTACGCGGGCCTCGTCT
GGGAGACCACCCGCGACGCCGACCGCGCCGACGCCTACTTCACCCGCGCCGTCCACGCCG
CCCCCGACGACTGCTACGTCCTCGGCTCCTACGCCGGCTTCCTCTGGGACGCCGAGGAAG
ACGATGACGACCACGGCGGCGAGCAGCCGCCGCCGCCGTTCATGGGGGCAGCTCAGCCTC
CTTCCATCACAGCGGCGTCTTGAGTGAACAGATGCTCTTGATCTCTCGCCGCCTGTAAAG
AAGACGAAGCAACGAACACCCGAGGAGGAATCACGGCGGCCTCTCTCCGGCGAGGCACCG
GCCGTCGTCGACGTCGCCGGCTCGCCGGCCCGGCGACCCTCGCCGTGGCTCGCAGCTGAA
TCCGGCCACCTGTAAAAATGAATCTGGAGAAGAGCACCACGCAGCTAAGGTGTAGTCGAT
CTTGTAAAATGAGCCTGCAAAGCCTACATGATGATCTTGTTTACTTCTTGTACATGTGTA
TCACTGTATCAGCAACGCTTGTGAAATAAATAAGCCACAGCCAAGTATGTTCTAGCTAGA
TCAGCAACTGCAAGGCTCTCATCTCCCTTCCAGAACAGAAATCATTTAAGCCAAAGTTCC
ACACCAACTTAACAAGATAGAATGCACAAAGTTTATTGCTTATTTGCTAAAGAGAAAAAG
GCAGGGTAATTCATATGGAAATAATAAGTTCTTCTAGCCTAGGAAATAGGATATGGTCAT
ATGCAATTGTTACCAACTACAAATAACAACA