Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0604400-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:23928713:23932370:1 gene:Os06g0604400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOSPHOLIPASE D ALPHA 3 description:Similar to Phospholipase D. (Os06t0604400-01)
Sequence	ATGGCTCACCTGCTGCTGCACGGCACGCTCGAGGCCACCATCCTCGAGGCCGACCACCTC TCCAACCCCACCCGCGCCACCGGCGCCGCCCCCGGGATCTTCCGCAAGTTCGTGGAAGGG TTCGAGGACTCGCTGGGGCTCGGGAAGGGGGCGACGCGGCTGTACGCGACGATCGACCTC GGCCGGGCGCGGGTGGGGCGGACGCGGGTCGTCGACGACGAGCCGGTGAACCCGCGGTGG TACGAGGTGTTCCACATCTACTGCGCCCACTTCGCCGCCGACGTGGTGTTCTCCGTCAAG GCGGCGCAGCCCATCGGCGCCACGCTCATCGGCCGCGCCTACCTCCCCGTCAGGGAGCTC CTGTCCGGCGAGGCCATCGAGCGCCGCCTCGACATCCTCGACGCCGGCAGGAGGAGGATC TCGCACGGGCCGACGATACACGTGCGGCTGCAGTTCCGCGACGTCGCCGGCGACCGCCAT GGGTGGGGCAGGGGCGTCTCCGGCGCGCGGTACCCCGGCGTGCCGTACACCTTCTTCTCG CAGCGCCCCGGGTGCAGGGTCACCCTGTACCAGGACGCGCACGTGCCCGACGCGTTCGCG CCCAGGATCCCGCTCGCCGGCGGCGGGTACTACCGGCAGGGGCGGTGCTGGGAGGACGTG TTCGACGCCATCAGCAACGCCAAGCACCTCATATACCTCACCGGCTGGTCCGTGTACACC GAGATCACGCTCATCCGTGACGGCACCCGGCAGCGCCCCGGCGGCGACGCCACCCTCGGC GAGCTCCTCAAGCGCAAGGCCAGCGAGGGCGTGCGCGTGCTGTTGCTGGTCTGGGACGAC CGCACCTCCGTCGAGTCGCTCGGCATGAAGTGGGGGTTCATGTCGACGCACGACGCCGAG ACGGCGGACTACTTCCGCGGCACCGACGTGCGCTGCGTCCTCTGCCCGCGGAACCCCGAC GCCGGCCGGAGCGCCATCATGGGCGCGCAGATCGCCTACATGATCACCCACCACCAGAAG ACCGTCATCGTCGACCACGACATGCCAGTGCCGCGTGGCGGTGGCAGCCGCCGCATCGTC AGCTTCGTCGGCGGCCTCGACCTCTGCGACGGCCGCTACGACACGCAGTTCCACTCCCTC TTCCGGACGCTCGACACGGCGCACCACAGCGACTTCCACCAGCCCAACCTCGACGGCGCG GCCGTCACCAAGGGCGGGCCGAGGGAGCCATGGCACGACATCCACTCCAAGATCGAAGGC CCCGCGGCTTGGGATGTGCTCTACAACTTCGAGCAGCGGTGGAGGAAGCAAGGCGGTGAC AAGGACCTCCTCCTAGACCTCAAAGCCATGGCCGACCTCATTATTCCGCCGTCTCCGGTG ATGTTCCCCGATGACGGTGAGGCCTGGAGTGTTCAGTTGTTCCGGTCCATCGATGGCGGC GCCTGCTTTGGCTTCCCTAGCACTCCAGAGGCTGCTGCAAGATCAGGCCTTGTCAGTGGC AAGAACAACACCATTGACAGGAGCATCCAAGATGCATACATCCACGCAATTCGCCGCGCC AAGAACTTCATCTACATCGAGAATCAGTACTTCCTTGGCAGCTCATTTGCATGGAAAGCC GATGGCATCAGACCAGAAGACATTGAGGCGTTGCATCTGATTCCCAGAGAGATTTCTCTG AAGATTGTGAACAAGATTGAAGCTGGTGAGCGTTTTGCAGTCTATGTTGTGCTGCCAATG TGGCCTGAAGGACCTCCTGCTAGTGGATCAGTGCAGGCAATACTGGATTGGCAGAGGAGG ACAATGGAGATGATGTACTATGATATTGCCGTTGCACTTGAGGCGAAGAGGATCAATGCT GACCCGAGGGATTACCTTACCTTCTTCTGCTTAGGGAACAGGGAAGTAAAGTTGAATGGT GAGTATGAACCTGCAGGTCGCCCTTTGGATGGCACAGACTATGCTAAGGCACAGAAGGCA CGCCGGTTCATGATCTATGTTCACTCCAAGATGATGATAGTTGACGACGAGTACATCATT GTTGGATCTGCCAACATCAACCAGAGGTCCATGGATGGGGGCAGAGACTCCGAGATCGCC ATGGGTGCATTCCAGCCATGCCACCTGAACACCAAGGGCCTGGTTGCAAGAGGACAAATC CACGGTTTCCGGATGTCGTTGTGGTATGAGCACCTTGGCATGCTGCATGACAACTTCCTG AACCCAGAGAGCCTGGAGTGTGTTCAGAGGGTGAACAAGATGGCTGACAAGTACTGGGAC CTCTACGCGAGCGATGAGCTTAACGATGACCTTCCTGGGCACCTGCTGACCTACCCGGTA CGTGTTACGAAGGAAGGCACGGTGACAGAGCTCCCAGGAGCGAAATTCTTCCCTGACACT CAGGCTCCAGTGATCGGCACGAAGGGGAACCTGCCTCCCTTTCTCACCACATAG

Peptide Sequence

PEP ID	Os06t0604400-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:23928713:23932370:1 gene:Os06g0604400 transcript:Os06t0604400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOSPHOLIPASE D ALPHA 3 description:Similar to Phospholipase D. (Os06t0604400-01)
Sequence	MAHLLLHGTLEATILEADHLSNPTRATGAAPGIFRKFVEGFEDSLGLGKGATRLYATIDL GRARVGRTRVVDDEPVNPRWYEVFHIYCAHFAADVVFSVKAAQPIGATLIGRAYLPVREL LSGEAIERRLDILDAGRRRISHGPTIHVRLQFRDVAGDRHGWGRGVSGARYPGVPYTFFS QRPGCRVTLYQDAHVPDAFAPRIPLAGGGYYRQGRCWEDVFDAISNAKHLIYLTGWSVYT EITLIRDGTRQRPGGDATLGELLKRKASEGVRVLLLVWDDRTSVESLGMKWGFMSTHDAE TADYFRGTDVRCVLCPRNPDAGRSAIMGAQIAYMITHHQKTVIVDHDMPVPRGGGSRRIV SFVGGLDLCDGRYDTQFHSLFRTLDTAHHSDFHQPNLDGAAVTKGGPREPWHDIHSKIEG PAAWDVLYNFEQRWRKQGGDKDLLLDLKAMADLIIPPSPVMFPDDGEAWSVQLFRSIDGG ACFGFPSTPEAAARSGLVSGKNNTIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWKA DGIRPEDIEALHLIPREISLKIVNKIEAGERFAVYVVLPMWPEGPPASGSVQAILDWQRR TMEMMYYDIAVALEAKRINADPRDYLTFFCLGNREVKLNGEYEPAGRPLDGTDYAKAQKA RRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGGRDSEIAMGAFQPCHLNTKGLVARGQI HGFRMSLWYEHLGMLHDNFLNPESLECVQRVNKMADKYWDLYASDELNDDLPGHLLTYPV RVTKEGTVTELPGAKFFPDTQAPVIGTKGNLPPFLTT

Transcript Sequence

Transcript ID	Os06t0604400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:23928713:23932370:1 gene:Os06g0604400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOSPHOLIPASE D ALPHA 3 description:Similar to Phospholipase D. (Os06t0604400-01)
Sequence	GGACGCTTTTCGCCTTGTTGGTGCACTGTCCCCTTCGTCTCGGAGGGAAGCTCGTATTGG ACGCGCCGCGAGCAGGTGACGTCAGCGGCAGCGGCGGCGGCGGCGGCGGGCGGCGGCGGA GCCGAGGAGGAGCGACCATGGCTCACCTGCTGCTGCACGGCACGCTCGAGGCCACCATCC TCGAGGCCGACCACCTCTCCAACCCCACCCGCGCCACCGGCGCCGCCCCCGGGATCTTCC GCAAGTTCGTGGAAGGGTTCGAGGACTCGCTGGGGCTCGGGAAGGGGGCGACGCGGCTGT ACGCGACGATCGACCTCGGCCGGGCGCGGGTGGGGCGGACGCGGGTCGTCGACGACGAGC CGGTGAACCCGCGGTGGTACGAGGTGTTCCACATCTACTGCGCCCACTTCGCCGCCGACG TGGTGTTCTCCGTCAAGGCGGCGCAGCCCATCGGCGCCACGCTCATCGGCCGCGCCTACC TCCCCGTCAGGGAGCTCCTGTCCGGCGAGGCCATCGAGCGCCGCCTCGACATCCTCGACG CCGGCAGGAGGAGGATCTCGCACGGGCCGACGATACACGTGCGGCTGCAGTTCCGCGACG TCGCCGGCGACCGCCATGGGTGGGGCAGGGGCGTCTCCGGCGCGCGGTACCCCGGCGTGC CGTACACCTTCTTCTCGCAGCGCCCCGGGTGCAGGGTCACCCTGTACCAGGACGCGCACG TGCCCGACGCGTTCGCGCCCAGGATCCCGCTCGCCGGCGGCGGGTACTACCGGCAGGGGC GGTGCTGGGAGGACGTGTTCGACGCCATCAGCAACGCCAAGCACCTCATATACCTCACCG GCTGGTCCGTGTACACCGAGATCACGCTCATCCGTGACGGCACCCGGCAGCGCCCCGGCG GCGACGCCACCCTCGGCGAGCTCCTCAAGCGCAAGGCCAGCGAGGGCGTGCGCGTGCTGT TGCTGGTCTGGGACGACCGCACCTCCGTCGAGTCGCTCGGCATGAAGTGGGGGTTCATGT CGACGCACGACGCCGAGACGGCGGACTACTTCCGCGGCACCGACGTGCGCTGCGTCCTCT GCCCGCGGAACCCCGACGCCGGCCGGAGCGCCATCATGGGCGCGCAGATCGCCTACATGA TCACCCACCACCAGAAGACCGTCATCGTCGACCACGACATGCCAGTGCCGCGTGGCGGTG GCAGCCGCCGCATCGTCAGCTTCGTCGGCGGCCTCGACCTCTGCGACGGCCGCTACGACA CGCAGTTCCACTCCCTCTTCCGGACGCTCGACACGGCGCACCACAGCGACTTCCACCAGC CCAACCTCGACGGCGCGGCCGTCACCAAGGGCGGGCCGAGGGAGCCATGGCACGACATCC ACTCCAAGATCGAAGGCCCCGCGGCTTGGGATGTGCTCTACAACTTCGAGCAGCGGTGGA GGAAGCAAGGCGGTGACAAGGACCTCCTCCTAGACCTCAAAGCCATGGCCGACCTCATTA TTCCGCCGTCTCCGGTGATGTTCCCCGATGACGGTGAGGCCTGGAGTGTTCAGTTGTTCC GGTCCATCGATGGCGGCGCCTGCTTTGGCTTCCCTAGCACTCCAGAGGCTGCTGCAAGAT CAGGCCTTGTCAGTGGCAAGAACAACACCATTGACAGGAGCATCCAAGATGCATACATCC ACGCAATTCGCCGCGCCAAGAACTTCATCTACATCGAGAATCAGTACTTCCTTGGCAGCT CATTTGCATGGAAAGCCGATGGCATCAGACCAGAAGACATTGAGGCGTTGCATCTGATTC CCAGAGAGATTTCTCTGAAGATTGTGAACAAGATTGAAGCTGGTGAGCGTTTTGCAGTCT ATGTTGTGCTGCCAATGTGGCCTGAAGGACCTCCTGCTAGTGGATCAGTGCAGGCAATAC TGGATTGGCAGAGGAGGACAATGGAGATGATGTACTATGATATTGCCGTTGCACTTGAGG CGAAGAGGATCAATGCTGACCCGAGGGATTACCTTACCTTCTTCTGCTTAGGGAACAGGG AAGTAAAGTTGAATGGTGAGTATGAACCTGCAGGTCGCCCTTTGGATGGCACAGACTATG CTAAGGCACAGAAGGCACGCCGGTTCATGATCTATGTTCACTCCAAGATGATGATAGTTG ACGACGAGTACATCATTGTTGGATCTGCCAACATCAACCAGAGGTCCATGGATGGGGGCA GAGACTCCGAGATCGCCATGGGTGCATTCCAGCCATGCCACCTGAACACCAAGGGCCTGG TTGCAAGAGGACAAATCCACGGTTTCCGGATGTCGTTGTGGTATGAGCACCTTGGCATGC TGCATGACAACTTCCTGAACCCAGAGAGCCTGGAGTGTGTTCAGAGGGTGAACAAGATGG CTGACAAGTACTGGGACCTCTACGCGAGCGATGAGCTTAACGATGACCTTCCTGGGCACC TGCTGACCTACCCGGTACGTGTTACGAAGGAAGGCACGGTGACAGAGCTCCCAGGAGCGA AATTCTTCCCTGACACTCAGGCTCCAGTGATCGGCACGAAGGGGAACCTGCCTCCCTTTC TCACCACATAGAGTAGCAAGATTCAGATTGTGCTGCATAATTGGAAACCTTGCACTGTTG GGTGGTGCTTCTAGATATGTAATTTCCAGCCCAATAATAGGGTGTCACGCCTATTTCTAG TCAAAATTTGGTTGATCAGTTGATGCTATTCTTTTGCACGAATCATGATTTTCCTCATGG GAGTACTGAAATAATAGGCATGTTTTGTTGGAGATTTGACCTGAATATACATACTACTGA AGTCTTGGACAACTTGGTGTTGTGGCACATTGTGTCAAAAGCTTGGTACGTACTTTAGTA GAGTAGGTTTTACCTGTGGGATTCAAGACAGCTTTGAGTGGTGGTTGTCAGCTACACATG GTCAATGTGCCTGTCTGGAGAAATTTTTTCTGCATGAACTGTATATCTCCTTTCCAATCT TTGAATTGGACAAGACAGAGCAGACTTGTAATCTTGAGTCAAACCATGCTGCTTTCTCCA AGTTTTAATACATGGACAAGGATTTCTATACTTGACAGTAACAACGTCACATTCTGGGAA AAGGTAGTAGGAGCAGTAAGTTTC