Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0604300-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:23921940:23924919:1 gene:Os06g0604300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOSPHOLIPASE D ALPHA 5 description:Chloroplast-localized phospholipase D, Herbivore defense (Os06t0604300-01)
Sequence	ATGGCTCACCTGCTGATGCACGGCACGCTCGACGCCACCATCTTCGAGGCCACCAACCTC ACCAACCCCACCCGCCTCACCGGCAACGCCCCCGAGGGCTTCCGCAAGTGGTGGGAAGGG CTGGAGAACGGGTTGGAGAAGACGACCGGGCTTGGCCCCGGCGGGACGAGGCTGTACGCG ACGGTGGACCTCGGCAGGGCGCGGCTCGGCCGGACGCGGGTGATCGACGACGAGCCGGTG AGCCCGCGGTGGGACGAGCGCTTCCACTTCTACTGCGCCCACTTCGCCGAGAACGTCGTC TTCTCCGTCAAGGTCGCGCTGTCCGTCGATGCCAAGCTCATCGGCCGCGCCTACCTCCCC GTCAGGGACCTCCTGTCCGGCGAGGCCGTCGAGCGCAAGCTCGACATCCTCGGCGACGAC AAGAAGAAGCTCCCCCACGGTCCGACCATCCACGTCCGGCTGCAGTTCAAGGACGTGGCC GCCGACGGCGGCGGGAAGTGGTGGGGCGGCGGCGTCGGCGACGCGGCGTACCCCGGCGTG CCGTGCACCTACTTCAAGCAGCACGCCGGGTGCAGGGTCACCCTGTACCAGGACGCGCAC GCGCCGGACACGTTCGCGCCGAGGATCCCGCTCGCCGGCGGCGCGCACTACCAGCAGGGG CGGTGCTGGGAGGACGTGTTCGACGCCATCAGCAACGCCAAGCACCTCATATACATCACC GGCTGGTCGGTGTTCACCGACATCACGCTCATCCGCGACCCGTCCCGGCAGCGCCCCGGC GGCGACGCCACCATCGGCGAGCTCCTCAAGCGCAAGGCCAGCGAGGGCGTCCGCGTGCTC ATGCTGGTCTGGAACGACGTCTCCTCCATCCAGGCGCTCCACGCCATCGGCATCAAGCTC AGCGTCGCGCAGACGCACGACGAGGACACGCTCGCCTACTTCGAGGACTCCGACGTGCAC TGCGTCCTCTGCCCGCGGCAAGCCGACGCCGCCGCCGGCAGCAGCTTCATCATGGGCACG AAGGTCTCACTCTTGGCCACCCACCACCAGAAGACCGTCATCGTCGACCACGACATGCCG GCCGGCACCGGCGGCGGCGGCTCCGACATCCGCTGCATCGTCAGCTTCGTCGGCGGCCTC GACCTCTGCGACGGCCGCTACGACACGCAGTCCCACTCCCTCTTCCGGACGCTCGACGCC GCGCACCACAAGGACTTCCACCAGCCGAGCATCGACGACGCCGAGCTCGCCAAGGGCGGG CCGAGGGAGCCATGGCACGACATCCACTCCAAGCTCGAGGGCCCCATCGCCTGGGACGTC CTCTACAACTTCGAGCAGCGGTGGCGGAAGCAGAGCGGCCACGCCGACCTCCTCGTCAAC CTCACCGCCCTCGAGCACCTCATCACGCCGCCGTCCCCGGTGAAGCTCCCCGGCACCAAC AACGACGACCACCACGACGACGCATGGAACGTGCAGCTCTTCCGCTCCATCGACGGCGGC GCGTGCGACGGCTTCCCGAGCAGCCCGGAGGCGGCGGCGCGCCTCGACCTCGTGAGCGGG AAGAACAACGTGATCGAGCGGAGCATCCAGGACGCGTACATCCACGCCATCCGCCGCGCC AGGGACTTCATCTACATCGAGAACCAGTACTTCATCGGGAGCTCCTACGGGTGGAGGCCC GGCGGCGGCGTCAGGCCGGAGGACGTCGAGGCGGTGAACCTGATCCCGAGGGAGCTCTCC CTCAAGATCGTGAGCAAGATCGCCGCCGGCGAGCGGTTCGCCGTCTACGTCGTGGTGCCG ATGTGGCCCGAGGGCCACCCTGGCAACGAGGCCATGCAGGCCATCCTCGACTGGCAGAGG AGGACGATGGAGATGATGTACTACGACATCGCCGTCGCGCTCAAGGCCAATCACAGCGAC GCCGACCCGAGGGATTACCTCACCTTCTTCTGCTTGGGGAACAGGGAGGCCAAGAGCCAT GGCGAGTACGTGCCTGCACATCGCCCGGATCAAGACACAGACTACGCCAAGGCGCAGAAC GCGCGCCGCTTCATGATCTATGTCCACTCCAAGATGATGATAGTTGATGATGAGTACATC ATCGTCGGGTCGGCCAACATCAACCAGCGGTCGATGGACGGCGGGCGGGACTCGGAGATC GCCATGGGAGCGTTCCAGCCACACCACCTGAACGTCAATGGGCAGGCTGCGAGAGGCCAG ATCCATGGCTTCCGGATGTCGCTGTGGTACGAGCACCTGGGGATGCTGCACGACGACTTC GTGCACCCGGGGAGCCTGGAGTGTGTCCGGAGAGTGAACGCGATGGCCGACAGGCACTGG CAGCTGTACGCCGGCGAGGAGCTCCACGGCGACCTCCCCGGACACCTGCTCACCTACCCG GTCGCCGTCGAGAAGGACGGCGGCGCCGTGACGGCGCTCCCGGGCGCCGAGTTCTTCCCG GACACGGAGGCGAAGGTGATCGGGACATTGGCGTCGTCGGCGTACATGATCCCCTACCTC ACGTCGTAG

Peptide Sequence

PEP ID	Os06t0604300-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:23921940:23924919:1 gene:Os06g0604300 transcript:Os06t0604300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOSPHOLIPASE D ALPHA 5 description:Chloroplast-localized phospholipase D, Herbivore defense (Os06t0604300-01)
Sequence	MAHLLMHGTLDATIFEATNLTNPTRLTGNAPEGFRKWWEGLENGLEKTTGLGPGGTRLYA TVDLGRARLGRTRVIDDEPVSPRWDERFHFYCAHFAENVVFSVKVALSVDAKLIGRAYLP VRDLLSGEAVERKLDILGDDKKKLPHGPTIHVRLQFKDVAADGGGKWWGGGVGDAAYPGV PCTYFKQHAGCRVTLYQDAHAPDTFAPRIPLAGGAHYQQGRCWEDVFDAISNAKHLIYIT GWSVFTDITLIRDPSRQRPGGDATIGELLKRKASEGVRVLMLVWNDVSSIQALHAIGIKL SVAQTHDEDTLAYFEDSDVHCVLCPRQADAAAGSSFIMGTKVSLLATHHQKTVIVDHDMP AGTGGGGSDIRCIVSFVGGLDLCDGRYDTQSHSLFRTLDAAHHKDFHQPSIDDAELAKGG PREPWHDIHSKLEGPIAWDVLYNFEQRWRKQSGHADLLVNLTALEHLITPPSPVKLPGTN NDDHHDDAWNVQLFRSIDGGACDGFPSSPEAAARLDLVSGKNNVIERSIQDAYIHAIRRA RDFIYIENQYFIGSSYGWRPGGGVRPEDVEAVNLIPRELSLKIVSKIAAGERFAVYVVVP MWPEGHPGNEAMQAILDWQRRTMEMMYYDIAVALKANHSDADPRDYLTFFCLGNREAKSH GEYVPAHRPDQDTDYAKAQNARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGGRDSEI AMGAFQPHHLNVNGQAARGQIHGFRMSLWYEHLGMLHDDFVHPGSLECVRRVNAMADRHW QLYAGEELHGDLPGHLLTYPVAVEKDGGAVTALPGAEFFPDTEAKVIGTLASSAYMIPYL TS

Transcript Sequence

Transcript ID	Os06t0604300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:23921940:23924919:1 gene:Os06g0604300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOSPHOLIPASE D ALPHA 5 description:Chloroplast-localized phospholipase D, Herbivore defense (Os06t0604300-01)
Sequence	CACACCATTGTTTTGCGAGCTTCTTCCCAGCCTTGTCAAGTGCACACAGCCACACACTGA AACTGAAGGAGCAGCAGCAATGGCTCACCTGCTGATGCACGGCACGCTCGACGCCACCAT CTTCGAGGCCACCAACCTCACCAACCCCACCCGCCTCACCGGCAACGCCCCCGAGGGCTT CCGCAAGTGGTGGGAAGGGCTGGAGAACGGGTTGGAGAAGACGACCGGGCTTGGCCCCGG CGGGACGAGGCTGTACGCGACGGTGGACCTCGGCAGGGCGCGGCTCGGCCGGACGCGGGT GATCGACGACGAGCCGGTGAGCCCGCGGTGGGACGAGCGCTTCCACTTCTACTGCGCCCA CTTCGCCGAGAACGTCGTCTTCTCCGTCAAGGTCGCGCTGTCCGTCGATGCCAAGCTCAT CGGCCGCGCCTACCTCCCCGTCAGGGACCTCCTGTCCGGCGAGGCCGTCGAGCGCAAGCT CGACATCCTCGGCGACGACAAGAAGAAGCTCCCCCACGGTCCGACCATCCACGTCCGGCT GCAGTTCAAGGACGTGGCCGCCGACGGCGGCGGGAAGTGGTGGGGCGGCGGCGTCGGCGA CGCGGCGTACCCCGGCGTGCCGTGCACCTACTTCAAGCAGCACGCCGGGTGCAGGGTCAC CCTGTACCAGGACGCGCACGCGCCGGACACGTTCGCGCCGAGGATCCCGCTCGCCGGCGG CGCGCACTACCAGCAGGGGCGGTGCTGGGAGGACGTGTTCGACGCCATCAGCAACGCCAA GCACCTCATATACATCACCGGCTGGTCGGTGTTCACCGACATCACGCTCATCCGCGACCC GTCCCGGCAGCGCCCCGGCGGCGACGCCACCATCGGCGAGCTCCTCAAGCGCAAGGCCAG CGAGGGCGTCCGCGTGCTCATGCTGGTCTGGAACGACGTCTCCTCCATCCAGGCGCTCCA CGCCATCGGCATCAAGCTCAGCGTCGCGCAGACGCACGACGAGGACACGCTCGCCTACTT CGAGGACTCCGACGTGCACTGCGTCCTCTGCCCGCGGCAAGCCGACGCCGCCGCCGGCAG CAGCTTCATCATGGGCACGAAGGTCTCACTCTTGGCCACCCACCACCAGAAGACCGTCAT CGTCGACCACGACATGCCGGCCGGCACCGGCGGCGGCGGCTCCGACATCCGCTGCATCGT CAGCTTCGTCGGCGGCCTCGACCTCTGCGACGGCCGCTACGACACGCAGTCCCACTCCCT CTTCCGGACGCTCGACGCCGCGCACCACAAGGACTTCCACCAGCCGAGCATCGACGACGC CGAGCTCGCCAAGGGCGGGCCGAGGGAGCCATGGCACGACATCCACTCCAAGCTCGAGGG CCCCATCGCCTGGGACGTCCTCTACAACTTCGAGCAGCGGTGGCGGAAGCAGAGCGGCCA CGCCGACCTCCTCGTCAACCTCACCGCCCTCGAGCACCTCATCACGCCGCCGTCCCCGGT GAAGCTCCCCGGCACCAACAACGACGACCACCACGACGACGCATGGAACGTGCAGCTCTT CCGCTCCATCGACGGCGGCGCGTGCGACGGCTTCCCGAGCAGCCCGGAGGCGGCGGCGCG CCTCGACCTCGTGAGCGGGAAGAACAACGTGATCGAGCGGAGCATCCAGGACGCGTACAT CCACGCCATCCGCCGCGCCAGGGACTTCATCTACATCGAGAACCAGTACTTCATCGGGAG CTCCTACGGGTGGAGGCCCGGCGGCGGCGTCAGGCCGGAGGACGTCGAGGCGGTGAACCT GATCCCGAGGGAGCTCTCCCTCAAGATCGTGAGCAAGATCGCCGCCGGCGAGCGGTTCGC CGTCTACGTCGTGGTGCCGATGTGGCCCGAGGGCCACCCTGGCAACGAGGCCATGCAGGC CATCCTCGACTGGCAGAGGAGGACGATGGAGATGATGTACTACGACATCGCCGTCGCGCT CAAGGCCAATCACAGCGACGCCGACCCGAGGGATTACCTCACCTTCTTCTGCTTGGGGAA CAGGGAGGCCAAGAGCCATGGCGAGTACGTGCCTGCACATCGCCCGGATCAAGACACAGA CTACGCCAAGGCGCAGAACGCGCGCCGCTTCATGATCTATGTCCACTCCAAGATGATGAT AGTTGATGATGAGTACATCATCGTCGGGTCGGCCAACATCAACCAGCGGTCGATGGACGG CGGGCGGGACTCGGAGATCGCCATGGGAGCGTTCCAGCCACACCACCTGAACGTCAATGG GCAGGCTGCGAGAGGCCAGATCCATGGCTTCCGGATGTCGCTGTGGTACGAGCACCTGGG GATGCTGCACGACGACTTCGTGCACCCGGGGAGCCTGGAGTGTGTCCGGAGAGTGAACGC GATGGCCGACAGGCACTGGCAGCTGTACGCCGGCGAGGAGCTCCACGGCGACCTCCCCGG ACACCTGCTCACCTACCCGGTCGCCGTCGAGAAGGACGGCGGCGCCGTGACGGCGCTCCC GGGCGCCGAGTTCTTCCCGGACACGGAGGCGAAGGTGATCGGGACATTGGCGTCGTCGGC GTACATGATCCCCTACCTCACGTCGTAGAGTGTTGCTCTGAGTGTGTGATCGAGTTGCCA TTCCTGCACACTGCTAGAGTGTTGCTCTGCTTTGGGTTTGGGCAGAGTTTGTTGTTTCAA GCAATGTAATCTATCTCCGGTTGAATTCTACAGCTCTATGTAGTGTTCTGTTCTAATATG AATTATGTTCATCGGCTTATTTC