Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0601000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:23732555:23734397:1 gene:Os06g0601000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os06t0601000-01)
Sequence

ATGGCGGCGATGGTGGGGGCGCCGCTCGCCGTGGCCGCGGCCGCCGCCGCGCCAGGGGCG
CGAGTGTTCCTGGCACGGCCGCTCCTCCGCCGCTCGCCGCGGGGCGTCGCCTGCGCCCTT
CGCCGGAGGCCCTCCAAGTACAAGAATAAAATCCAGAATGAGGAGGTTGTAGTAGAGGAT
GATATTGGCGGTGGTGGTGAAGACGATGACGACGCGCTGGAAGCACTTTTTAAGCAGTTG
GAAGAAGATCTCAAGAATGATGATTTGTCTGTTGAGGATGATGACGATGGAATTTCAGAA
GAAGATATGGCAAGATTTGAGCAGGAGTTGGCAGAGGCAATCGGGGATATTGCTGATGCT
GATGAATCTGGAGAGGGTTCGTCATTAGGCTCTGAGGCTTATGGGAATGATGAAAAAACG
GATGAAATCAAACGGCCAGAGCTGAAAAACTGGCAACTTAAGAGGCTGGCTCGTGCTCTC
AAAATAGGTCGCCGTAAAACTAGTATAAAGAATCTTGCAGGGGAACTAGGCCTGGATAGG
ACTTTGGTCATTGAATTGCTCCGAAATCCACCTCCAAAACTTCTATTCATGTCTGATTCT
TTGCCTGATGAAGACCCTTCTAAACCTGAAATCAAGGAAATAGAGCCCTCTCCAGTAGTT
GATAACGCTGATGTCACTGAAACCAAGCCACAGACGGAACTTCCTGTTCATGTCATGTGC
GCAGAATGGTCTTCACAGAAAAGATTAAAAAAGGTGCAACTGGAGACATTAGAAAGAGTC
TACTCCCGAACCAAACGCCCTACAAATACAATGATCAGCAGCATAGTTCAAGTGACAAGC
CTTCCACGGAAGACCATTGTTAAGTGGTTTGAGGATAGAAGGGAACAGGATGGGGTACCT
GACCATCGAGTTGCATTCAAGAGATCCCTATCTGAGACCATAGCTAGTTGA

Peptide Sequence

PEP ID

Os06t0601000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:23732555:23734397:1 gene:Os06g0601000 transcript:Os06t0601000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os06t0601000-01)
Sequence

MAAMVGAPLAVAAAAAAPGARVFLARPLLRRSPRGVACALRRRPSKYKNKIQNEEVVVED
DIGGGGEDDDDALEALFKQLEEDLKNDDLSVEDDDDGISEEDMARFEQELAEAIGDIADA
DESGEGSSLGSEAYGNDEKTDEIKRPELKNWQLKRLARALKIGRRKTSIKNLAGELGLDR
TLVIELLRNPPPKLLFMSDSLPDEDPSKPEIKEIEPSPVVDNADVTETKPQTELPVHVMC
AEWSSQKRLKKVQLETLERVYSRTKRPTNTMISSIVQVTSLPRKTIVKWFEDRREQDGVP
DHRVAFKRSLSETIAS

Transcript Sequence

Transcript ID

Os06t0601000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:23732555:23734397:1 gene:Os06g0601000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os06t0601000-01)
Sequence

ACGGAGAGGAGGGCAGAGGTGGGAGCGAAAATATCCGAAGAGAGAGCTCGCGGAAATGGC
GGCGATGGTGGGGGCGCCGCTCGCCGTGGCCGCGGCCGCCGCCGCGCCAGGGGCGCGAGT
GTTCCTGGCACGGCCGCTCCTCCGCCGCTCGCCGCGGGGCGTCGCCTGCGCCCTTCGCCG
GAGGCCCTCCAAGTACAAGAATAAAATCCAGAATGAGGAGGTTGTAGTAGAGGATGATAT
TGGCGGTGGTGGTGAAGACGATGACGACGCGCTGGAAGCACTTTTTAAGCAGTTGGAAGA
AGATCTCAAGAATGATGATTTGTCTGTTGAGGATGATGACGATGGAATTTCAGAAGAAGA
TATGGCAAGATTTGAGCAGGAGTTGGCAGAGGCAATCGGGGATATTGCTGATGCTGATGA
ATCTGGAGAGGGTTCGTCATTAGGCTCTGAGGCTTATGGGAATGATGAAAAAACGGATGA
AATCAAACGGCCAGAGCTGAAAAACTGGCAACTTAAGAGGCTGGCTCGTGCTCTCAAAAT
AGGTCGCCGTAAAACTAGTATAAAGAATCTTGCAGGGGAACTAGGCCTGGATAGGACTTT
GGTCATTGAATTGCTCCGAAATCCACCTCCAAAACTTCTATTCATGTCTGATTCTTTGCC
TGATGAAGACCCTTCTAAACCTGAAATCAAGGAAATAGAGCCCTCTCCAGTAGTTGATAA
CGCTGATGTCACTGAAACCAAGCCACAGACGGAACTTCCTGTTCATGTCATGTGCGCAGA
ATGGTCTTCACAGAAAAGATTAAAAAAGGTGCAACTGGAGACATTAGAAAGAGTCTACTC
CCGAACCAAACGCCCTACAAATACAATGATCAGCAGCATAGTTCAAGTGACAAGCCTTCC
ACGGAAGACCATTGTTAAGTGGTTTGAGGATAGAAGGGAACAGGATGGGGTACCTGACCA
TCGAGTTGCATTCAAGAGATCCCTATCTGAGACCATAGCTAGTTGATAATTACTTCAAAT
TAGCATGTATGATGGTTTCCTCTTTGAACTATTTGCAAATTCTAAATTTGAATTTTTGAA
GTAGAAGAATTTCTGCAAGCCCAATATGGAGTATGTTTTATATTAGTACTCCCATATCAA
CCAATGTGACAGGTACAACTCTTAATTGCCACTTTGATAATTTTATTTGTTGCACTCTGG
ACCACC