Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0597500-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:23547462:23550396:-1 gene:Os06g0597500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1 description:Pentatricopeptide repeat protein, Regulation of inflorescence branch development (Os06t0597500-01)
Sequence	ATGGCAATGGCGGCGGCGAGGAGGGGCCACGGGATGCCGCTCTGGGAGTGCAACGTGCTG ATCAGGACGCTGGCGAGGCGGGGGAGCTTCGCGCGCGTCATGGCGGTGTACTACGACCTC CGCGCGCGGGGACTCGTGGCGGACAGCTTCACCTACCCGTTCGTGCTCAGGGCCGTCGGG GTCCTCAAGCTGTCGGTCGAGGGGCGCAAGGCGCACGCGGCCGCTGTCAAGACCGGGTTC CGGTGGGACGCCTACACCGGGAGCTCGCTGATGGAGATGTACACGATGCTGGGGCGCGTG GACATCGCGCGGAAGGTGTTCGACGAAATGCCGAGTAGGGCGCTGGTGCTGTGGAACATG ATGGTCAGGTGCTACATCAGGTGCGGGTGGTACTCGGCGGCAGTTGCTTTGTCTGAACAG ATGGAGAGAAGCGGTGTCACACCTGACAGGGTGACGTTGGTGACGGCGGTGACGGCGTGC TCTAGAGCAAGGGACCTGAGCTTGGGAAGGAGGATTCATGTGTACATGGATAACGTCTTC GGTTTCAATCTGCCAGTTGCAAATGCTCTGCTGGACATGTACACGAAGAATGATTGCTTG GAAGAGGCGGTGAAATTGTTCGAGCAAATGCCTGCGAGGAACATAATTTCTTGGACCATA CTTGTGTCGGGATATGGCCTTGCTGGGCAGCTGGACAAGGCCAGAGTGCTCTTCAACCAG TGCAAAGAGAAGGATCTAATTCTGTGGACTGCAATGATCAATGCGTGTGTGCAACACGGA TGCTTCGAGGAGGCGCTGACATTGTTCCGAGATATGCAGATGCAACGGGTTGAGCCAGAC AGGTTCACTGTTGTCACTCTCCTGACATGCTGTGCCAATCTTGGCGCTCTTGATCAAGGT GAATGGATTCACCAGTATGCTGAACAAAGGAAAATGAAGATCGATGCAGTCCTAGGCACC GCATTGATTGACATGTATTCTAAATGTGGGCACATTGAGAAGTCTCTAGAGGTCTTCTGG CGAATGCAAGGCAGAGATGCCACAGCTTGGACTGCCATCATCTGTGGGCTGGCCACAAAT GGTCAGGCTGGTAGAGCTCTTGAACTGTTTCAAGATATGCAGAGAAGTAAAGTTAAGCCC GACGGTGTTACGTTTATTGGGGTGCTAAGTGCATGCTGCCATGGTGGCTTGGTTGATGAA GGCCGGAAGCAGTTCCATGCAATGAGGGAGGTTTATCAGATAGAACCAAGAGTTGAACAC TATAGCTGCCTTGTGAACCTCCTAGGTCGTGCTGGTCTACTAGATGAAGCTGAGAGGTTG ATCGGTGACGTTCCAATTAACAAGGATGCTATGCCACTGTTTGGTGCACTCCTCACTGCT TGCAAGGCTCATGGGAATGTTGAGATGAGTGAACGGTTAACCAAACGAATCTGTGAGCAA GATTCCCAAATTACTGATGTGAATTTGCTCATGTCTAATGTATATGCAACAGCAAGTAGA TGGGAGGATGTGATAAGGGTACGGGGCAAGATGGCACACCCTACTGTCAAGAAGAATGCA GGGTGTAGCTTGATTGAGGTGAAGGGGTACTGA

Peptide Sequence

PEP ID	Os06t0597500-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:23547462:23550396:-1 gene:Os06g0597500 transcript:Os06t0597500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1 description:Pentatricopeptide repeat protein, Regulation of inflorescence branch development (Os06t0597500-01)
Sequence	MAMAAARRGHGMPLWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVG VLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNM MVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVF GFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ CKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQG EWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATN GQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEH YSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQ DSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKGY

Transcript Sequence

Transcript ID	Os06t0597500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:23547462:23550396:-1 gene:Os06g0597500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1 description:Pentatricopeptide repeat protein, Regulation of inflorescence branch development (Os06t0597500-01)
Sequence	CTTGAGTTCGGGGAGGAATCGCCGGCGGATCGCCGACGTGCAGCCATCCGCCGCGACGAG CAAATCCCCGGCGACCTCCACCGTCTCCCCGGTGCGCAGCACGCGGGCCGTCACCACGAC CCCGCCATCTCCGTCCCCTTCCGGCGCCATCTCGAACGACACGAACTGGTGGCCCCAGAG CACGGTCACGCCGGCCGGCAGCGCCTCGTGCAGCCGCCGGTGCAGGTCGCCCCAGTGCGC CGCCCTGAAGCCGAACCCCTCGTCCCTCGTCAGCGTCCTCCCCGCCTTCGTCTCGCCGTC CGTCGCCCTGTTCTGCGCGCGCGCCGCGCTCACGGGTGGGTCAAGGCAAGGGGAAGGGAG GAGGAGGAGGCCGGCGGATTTACAGGGGGGAGCTTAGCTTACCAGGTCGACGGCGAGCGG CAGCGTGGCGGCGTCGAGGCGCCCGGGGATCCAGCGGGCGAGCGTCTCCATGGACTGCGC GTCGAGCCCCAGCCCGGCGCCCGTGCCGCTCCCGGCCCCCGGCGCCGCCGCCTTCTCCAC CACCACCGCCTCCCACCCCGCCTCCGCCACCGCGTGCGCGCATGCCAGCCCCGCCACGCT CCCTCCCACCACCACCGCCACTCGCTTCCCCACCATCTCGAGACTCGAGAGAGAGGCACA CACACAAACACCTACCCTTCTCTCCCGTGAGGCTGTGACTTTCCGCTCTCTATATAGGAA AAGATTCCCCCCCCACGTCTTGGCCGCGTCGCGTCGCCGCCACCCACCCCGCGCGATGGC AATGGCGGCGGCGAGGAGGGGCCACGGGATGCCGCTCTGGGAGTGCAACGTGCTGATCAG GACGCTGGCGAGGCGGGGGAGCTTCGCGCGCGTCATGGCGGTGTACTACGACCTCCGCGC GCGGGGACTCGTGGCGGACAGCTTCACCTACCCGTTCGTGCTCAGGGCCGTCGGGGTCCT CAAGCTGTCGGTCGAGGGGCGCAAGGCGCACGCGGCCGCTGTCAAGACCGGGTTCCGGTG GGACGCCTACACCGGGAGCTCGCTGATGGAGATGTACACGATGCTGGGGCGCGTGGACAT CGCGCGGAAGGTGTTCGACGAAATGCCGAGTAGGGCGCTGGTGCTGTGGAACATGATGGT CAGGTGCTACATCAGGTGCGGGTGGTACTCGGCGGCAGTTGCTTTGTCTGAACAGATGGA GAGAAGCGGTGTCACACCTGACAGGGTGACGTTGGTGACGGCGGTGACGGCGTGCTCTAG AGCAAGGGACCTGAGCTTGGGAAGGAGGATTCATGTGTACATGGATAACGTCTTCGGTTT CAATCTGCCAGTTGCAAATGCTCTGCTGGACATGTACACGAAGAATGATTGCTTGGAAGA GGCGGTGAAATTGTTCGAGCAAATGCCTGCGAGGAACATAATTTCTTGGACCATACTTGT GTCGGGATATGGCCTTGCTGGGCAGCTGGACAAGGCCAGAGTGCTCTTCAACCAGTGCAA AGAGAAGGATCTAATTCTGTGGACTGCAATGATCAATGCGTGTGTGCAACACGGATGCTT CGAGGAGGCGCTGACATTGTTCCGAGATATGCAGATGCAACGGGTTGAGCCAGACAGGTT CACTGTTGTCACTCTCCTGACATGCTGTGCCAATCTTGGCGCTCTTGATCAAGGTGAATG GATTCACCAGTATGCTGAACAAAGGAAAATGAAGATCGATGCAGTCCTAGGCACCGCATT GATTGACATGTATTCTAAATGTGGGCACATTGAGAAGTCTCTAGAGGTCTTCTGGCGAAT GCAAGGCAGAGATGCCACAGCTTGGACTGCCATCATCTGTGGGCTGGCCACAAATGGTCA GGCTGGTAGAGCTCTTGAACTGTTTCAAGATATGCAGAGAAGTAAAGTTAAGCCCGACGG TGTTACGTTTATTGGGGTGCTAAGTGCATGCTGCCATGGTGGCTTGGTTGATGAAGGCCG GAAGCAGTTCCATGCAATGAGGGAGGTTTATCAGATAGAACCAAGAGTTGAACACTATAG CTGCCTTGTGAACCTCCTAGGTCGTGCTGGTCTACTAGATGAAGCTGAGAGGTTGATCGG TGACGTTCCAATTAACAAGGATGCTATGCCACTGTTTGGTGCACTCCTCACTGCTTGCAA GGCTCATGGGAATGTTGAGATGAGTGAACGGTTAACCAAACGAATCTGTGAGCAAGATTC CCAAATTACTGATGTGAATTTGCTCATGTCTAATGTATATGCAACAGCAAGTAGATGGGA GGATGTGATAAGGGTACGGGGCAAGATGGCACACCCTACTGTCAAGAAGAATGCAGGGTG TAGCTTGATTGAGGTGAAGGGGTACTGAGGAGTTGTTGAAGCATATAATGCTTGGACAAA GGAATTGTTGAAGCATCCATTAGTTTGACTGGACCAACAGAAGCATGATCAATCACTGGA AGCCGTTTCATTAGCAATTTTGAAGAACCTTGTCTGAACAGACATTCGAGTGATCAGGCT TGTACAGTTAGTTAATTTGAGGACTACTGAACTTCAGCTAGCTTGTTTCAGGCTTGTAGC AGAGCTGGATTTTTTTTACTCTTGCCAGGAAATGGAACACGGTTCTGCAGATGAAAAAAC AAGGTTAGACACCAATGCCAGTAGTATTTTTTTTTCTGTTGTTGCCTATGCCTATCAGTG CAGATGATTATATCTAATGTGCAACCATAACTTCTTAACAATGGATGGACGAACATTATC ATCGCAGCATGATTCTGTCATTTGTCAGCTTGTTAAAAATGCTATACTTGGATTTTCAGT TTGCTCTTGTTGATGTATTCAGCATATCCACTCAAAACTCACTAACACATAAAACATCAC TTTGAAGTGAATGCAATATTTATTTATGGAAGAAGGTTCATCTGCAAGTCACAGT