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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0597000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:23501973:23503491:1 gene:Os06g0597000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA23 description:Similar to Auxin responsive protein IAA-Re. (Os06t0597000-01);Similar to Auxin-responsive protein IAA23. (Os06t0597000-02)
Sequence

ATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGAC
ACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCC
GAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCG
CGGGCGGTGGGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCC
GCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGAC
CTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCC
TGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTG
GTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTC
GGCGACGTCCCCTGGAAGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGC
TCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAA

Peptide Sequence

PEP ID

Os06t0597000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:23501973:23503491:1 gene:Os06g0597000 transcript:Os06t0597000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA23 description:Similar to Auxin responsive protein IAA-Re. (Os06t0597000-01);Similar to Auxin-responsive protein IAA23. (Os06t0597000-02)
Sequence

MSTSSGADSSPPVSGLDYDDTALTLALPGSSSSSSSTADPERKRAAHADHADAKPPSPKA
RAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFAS
CLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKS
SEAVNLSPRRSSR

Transcript Sequence

Transcript ID

Os06t0597000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:23501973:23503491:1 gene:Os06g0597000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA23 description:Similar to Auxin responsive protein IAA-Re. (Os06t0597000-01);Similar to Auxin-responsive protein IAA23. (Os06t0597000-02)
Sequence

ACCACCACACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCG
ATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGA
TGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACA
CCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCG
AACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGC
GGGCGGTGGGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCG
CGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACC
TCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCT
GCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGG
TCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCG
GCGACGTCCCCTGGAAGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCT
CCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAA
CGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAA
AGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCG
TAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACG
AAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGG
TTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGC
GGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTT
CGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATA
CCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTTCTGTCCATTGATGCATTGCAA
GGTCAAATATAGGAGCACAATAATCTG