Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0583400-02
CDS Infomation	cds chromosome:IRGSP-1.0:6:22796510:22800197:-1 gene:Os06g0583400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS-1 TYPE HISTONE DEACETYLASE 1 description:Class-I type histone deacetylase, Seedling root growth (Os06t0583400-01);Similar to Histone deacetylase. (Os06t0583400-02)
Sequence	ATGGACGCCTCCGCCGGAGGCGGGGGGAACTCGCTGCCGACGGCGGGGGCCGACGGGGCC AAGCGGCGGGTGTGCTACTTCTACGACGCGGAGGTGGGGAACTACTACTACGGGCAGGGG CACCCGATGAAGCCGCACCGCATCCGGATGACCCACGCGCTGCTCGCCCACTACGGCCTC CTCGACCAGATGCAGGTGCTCAAGCCCCACCCGGCGCGCGACCGCGACCTCTGCCGCTTC CACGCCGACGACTACGTCGCCTTCCTCCGCTCCGTCACGCCGGAGACCCAGCAGGACCAG ATCCGGGCGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTAC AGCTTCTGCCAGACCTACGCCGGGGGATCCGTCGGCGGCGCCGTCAAGCTCAACCACGGC CACGACATCGCCATCAACTGGGCCGGCGGCCTCCACCACGCCAAGAAGTGCGAGGCCTCG GGATTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAATACCACCAG CGTGTTCTCTATGTGGATATCGATATCCACCATGGGGATGGTGTGGAGGAGGCGTTCTAC ACGACGGACAGGGTGATGACGGTCTCGTTCCACAAGTTTGGGGATTATTTCCCGGGGACC GGGGACATTCGCGATATTGGGCACTCAAAGGGGAAGTATTACTCTCTGAATGTCCCGTTG GACGACGGTATCGACGACGAGAGCTACCAGTCGTTGTTCAAGCCGATCATGGGGAAGGTG ATGGAGGTTTTTCGCCCTGGCGCGGTGGTGCTCCAGTGCGGTGCGGACTCTCTGTCGGGT GATAGGTTGGGTTGCTTCAACCTGTCAATCAGGGGCCACGCGGAATGCGTGAGATTCATG AGGTCCTTCAATGTCCCGCTGTTGCTGCTTGGTGGTGGTGGGTATACCATAAGAAATGTT GCGCGGTGTTGGTGCTATGAGACAGGAGTTGCACTTGGTCATGAGCTCACTGACAAGATG CCTCCAAATGAGTATTTTGAGTACTTTGGTCCAGATTATACACTTCATGTTGCACCAAGT AACATGGAGAACAAAAACACACGCCAGCAGTTGGATGATATAAGATCAAGACTTCTTGAT AATCTTTCAAAACTTCGACATGCTCCTAGCGTCCAATTTCAAGAGCGACCCCCTGAGGCT GAGCTACCTGAGCAAGATGAAGACCAAGAGGATCCTGATGAAAGGCACCATGCTGATTCT GATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGGAGGAGCAGTATTCAG AATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGATGCCGCAGATCAGGTATTTTTCTAT TAA

Peptide Sequence

PEP ID	Os06t0583400-02
PEP Infomation	pep chromosome:IRGSP-1.0:6:22796510:22800197:-1 gene:Os06g0583400 transcript:Os06t0583400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS-1 TYPE HISTONE DEACETYLASE 1 description:Class-I type histone deacetylase, Seedling root growth (Os06t0583400-01);Similar to Histone deacetylase. (Os06t0583400-02)
Sequence	MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL LDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPL DDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFM RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPS NMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADS DVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQVFFY

Transcript Sequence

Transcript ID	Os06t0583400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:22796510:22800197:-1 gene:Os06g0583400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS-1 TYPE HISTONE DEACETYLASE 1 description:Class-I type histone deacetylase, Seedling root growth (Os06t0583400-01);Similar to Histone deacetylase. (Os06t0583400-02)
Sequence	AAGGAGAGGGCAAAGAGGGGAAAAGAAAAAAAAAAGAGATAAAAAAAAAATCTCCTCCTC CTCGCCGCCGCCGCCGCCGCCGCCATGGACGCCTCCGCCGGAGGCGGGGGGAACTCGCTG CCGACGGCGGGGGCCGACGGGGCCAAGCGGCGGGTGTGCTACTTCTACGACGCGGAGGTG GGGAACTACTACTACGGGCAGGGGCACCCGATGAAGCCGCACCGCATCCGGATGACCCAC GCGCTGCTCGCCCACTACGGCCTCCTCGACCAGATGCAGGTGCTCAAGCCCCACCCGGCG CGCGACCGCGACCTCTGCCGCTTCCACGCCGACGACTACGTCGCCTTCCTCCGCTCCGTC ACGCCGGAGACCCAGCAGGACCAGATCCGGGCGCTCAAGCGCTTCAACGTCGGCGAGGAC TGCCCCGTCTTCGACGGCCTCTACAGCTTCTGCCAGACCTACGCCGGGGGATCCGTCGGC GGCGCCGTCAAGCTCAACCACGGCCACGACATCGCCATCAACTGGGCCGGCGGCCTCCAC CACGCCAAGAAGTGCGAGGCCTCGGGATTCTGCTACGTCAACGACATCGTCCTCGCCATC CTCGAGCTCCTCAAATACCACCAGCGTGTTCTCTATGTGGATATCGATATCCACCATGGG GATGGTGTGGAGGAGGCGTTCTACACGACGGACAGGGTGATGACGGTCTCGTTCCACAAG TTTGGGGATTATTTCCCGGGGACCGGGGACATTCGCGATATTGGGCACTCAAAGGGGAAG TATTACTCTCTGAATGTCCCGTTGGACGACGGTATCGACGACGAGAGCTACCAGTCGTTG TTCAAGCCGATCATGGGGAAGGTGATGGAGGTTTTTCGCCCTGGCGCGGTGGTGCTCCAG TGCGGTGCGGACTCTCTGTCGGGTGATAGGTTGGGTTGCTTCAACCTGTCAATCAGGGGC CACGCGGAATGCGTGAGATTCATGAGGTCCTTCAATGTCCCGCTGTTGCTGCTTGGTGGT GGTGGGTATACCATAAGAAATGTTGCGCGGTGTTGGTGCTATGAGACAGGAGTTGCACTT GGTCATGAGCTCACTGACAAGATGCCTCCAAATGAGTATTTTGAGTACTTTGGTCCAGAT TATACACTTCATGTTGCACCAAGTAACATGGAGAACAAAAACACACGCCAGCAGTTGGAT GATATAAGATCAAGACTTCTTGATAATCTTTCAAAACTTCGACATGCTCCTAGCGTCCAA TTTCAAGAGCGACCCCCTGAGGCTGAGCTACCTGAGCAAGATGAAGACCAAGAGGATCCT GATGAAAGGCACCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGAC TCAGGAAGGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGAT GCCGCAGATCAGGTATTTTTCTATTAAAACTCATTGAAGTAATGTTATGTGCTGGTGGTG ACAGTTGTTATGGTTAATGTGTGCTCAAAGGTGTGTAAGCAGCTATACTTTCTTTCATGA ATAGTGTATTCTGCTGTTTGTTCCTTTCTGAATGGTTGTTGCATCTTCAGAGAGCATATT GATATTAAATAGCCGTGGACTGCGAAAGACATCAATTGTGAGTTGATGTGTTGTGATGTT GAATATTTTGAATTTTAATCCTTGCTGTAGCGACAGTTCTGAAATTTATATACTCAACTT TTCAAATTAAACACTAAGGATTGGAAGAGCTGAATCATCATAGCGAAGTAAAGGACAACT ATTATGATGTGACTATACAACATGAAAATCTAATTTCATTTTTCTGGATAATGCATCAGT ACCATATTCGTTTGTCTGTATCATGGTTTCTTTTATGGTCCTCGGGTGTTGGTATTAGTT TTTCAACCTTAGCCCTTAATTTTAGTTAAGGTTGTAAGATGAATGAAGCTATATAGGATC CAGCATTGTTTGATTCTTGAGAGTCAGATATTTAATTCAGATTTCTCAAATGTTCTGATG CACATTTGCACCCGGTTGGGACTTATTTCTAATAGTAATTCTATTTGATAAGTGATTTGC ATAGGCTTCAAAAGTATAATTTGACAGTTTGACCATTAACTTCTCTTACAATATATTGTT AGTGGCAACAAAACCAATTCATGTGGAAGCACTTCCGAATATGAATCCACTGGTACAACT TTTGTACAGTAAACTTGCAAATATAATTTGACTCATTGTTGGTTAGAGCTTACAAAATTT GACTTTTCAAGTACATGGACGAGTTAGGGCAAAGGGAATACCTTTTCTTTGCAAGTGCAA ATCTAATTTATCAATTCACTGTGGTTATGTATATCAAATAATTTCCTCGGACTTGTGAAA GTTTGATGCTCCCATGTTCTACCGTTGGTCTTTTGCTGTTGGTGCAGTTCTAGTAAAAGA ATTGTTGCATTGATCATTTAACGTCTTATAGTGAATCCTTTATTGGCACC