Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0578700-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:22522400:22526017:1 gene:Os06g0578700 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os06t0578700-01)
Sequence

ATGGGTAGACTCCATAATTTGTTGCTTCTGTTAGTGTGCTTCTTCTCCACGCTATTGCTC
GCACAGGTGATGAGTGCTGCTGCAGGGATGGCAGCAGTGAAAGTGAGCACCACACCCATC
TTCTCCAAGATCCCACGAGCTCAGACGACCAAGGATTTTCAGGTGCTACTACGCATTGAG
GCGCCACCACTAGTGGATCTCAAGGGCCGTGTCCCCATTGATCTTGTCATGGTGCTCGAC
GTTGACGTCGAATCAGTGAGTCTGGAACCGGTGAAAAAAGCCATGAAATTCGCCATCCAA
CAACTCAGTGATAAAGACTCTATCGCCATCTTTGGGCCATCCATGAGCCGAGAGGTCATC
CCTAAGTTTATGAGTATTCATGGTAGCCGAAGGGTTGCTGAGAAGAAGGTAGATGAGTTG
GAGGGCCGTCGCATTGCCGGTCCAGCAAGGTCAAGCTTGGATGAGGCCCTCAAGATGCTG
GAGGAGCAGCCGGCGAGCTCTTCCGACGGCCGCGCGAAGTTCATCGTGTTGGTGACCGAC
GGAGAGGACATCACCCGCTTCAACTCCGGCATGCCGGAGTGGTTCACCGCCGCCCTGGCC
AAGTACCCCGTGCACGCCTTCGGCCTGGGCGCCTCGCACGACGCCGCGGCGCTGCGCCTC
ATCGCCCAGCGATCGCATGGCACCTACTCCTTCCTCGACGACGGCAACGTCGACAAGGTC
GCAAGCGCGCTCGCCCTGTGCCTCGGCGGTCTCAAGTCCGTCGCCGCCGTCGGCGCGCGC
GTCGTCCTCAAGGCGGCGAGCGGCAGCGGCGTGAGGATCGACAGGATCAGCTCCGGGGAC
TACGCGAGTTCAGTCTCCCAGGTCGACGGGGGCGCCTCCGGCGAGATCGTCATCGGCGCC
CTCTACGCCGGCGAGGTCAAGAGCTTCGTCGTCCACCTCTACGTGCCCGCCGCGCCGCCG
GCATTGCGGACGGTGGAGGGCGTCTGCTGCGACCAGCAGCAGCTGCTCGTCGCCAGCCTC
GATGGCCAGCTGTACACTAGTGGCGGCGTGGACGTCGACGACGCAGCAGCACCTGTTGAT
CTCGTCGTGGAGAGGCCTAACGCCGCCGTGCTGGTTCCCTCCGCCATTGTCGTCAACCAA
ATCTTCCAGTTCAGTGTGCTGAAGATGTTCGACACCTTCATCGACAAAGAGATCCTCCAC
CGCACTCCGGTGACCGGGTGGAACGACGTCGACGTCGACGACCTGGGGAGGAAGCTGCTG
GCGAGGTGGGAGGAGCTCGTGCTCGAGCACCAGTTCTGGGTCGGCCTCGATCTGGGATCC
CTCGACGGCGAGATCACCGCGGTGGCGAACAGCCTGAGCAAGCAGTACATCGTTGGCACG
GCGTACATATTCTCATGGATGTCGAGCTACAAGATGCAGCGGCCGACGGCGATGGGGTCG
CCGGCGAACGTGGTGGGCGTGTTCGTGACGCTGGAGGTGCACCTGACGCTGCAGGTGGCG
ATCACGCTGCCGGAGAGCGGCGGCGACGAGGGTGAGTGCCACGAGTGCGAGTACACCTGC
GAGAAGCAGCTGCCGCCTGCGCCGCCGCTGCTGGAGGCGTCTGGACACGATGGCAGCAGC
TACCGTCTCAACGCCGCGTACGAGGGCGTCGTATCGCTCGACGACATCAACCAATTCATG
ATCAAAATCTACCAGGGCATGGTGAAAGCGAACAATTTGAAGCAATGCCAGCCACGTGCT
GTCGCCTGA

Peptide Sequence

PEP ID

Os06t0578700-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:22522400:22526017:1 gene:Os06g0578700 transcript:Os06t0578700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os06t0578700-01)
Sequence

MGRLHNLLLLLVCFFSTLLLAQVMSAAAGMAAVKVSTTPIFSKIPRAQTTKDFQVLLRIE
APPLVDLKGRVPIDLVMVLDVDVESVSLEPVKKAMKFAIQQLSDKDSIAIFGPSMSREVI
PKFMSIHGSRRVAEKKVDELEGRRIAGPARSSLDEALKMLEEQPASSSDGRAKFIVLVTD
GEDITRFNSGMPEWFTAALAKYPVHAFGLGASHDAAALRLIAQRSHGTYSFLDDGNVDKV
ASALALCLGGLKSVAAVGARVVLKAASGSGVRIDRISSGDYASSVSQVDGGASGEIVIGA
LYAGEVKSFVVHLYVPAAPPALRTVEGVCCDQQQLLVASLDGQLYTSGGVDVDDAAAPVD
LVVERPNAAVLVPSAIVVNQIFQFSVLKMFDTFIDKEILHRTPVTGWNDVDVDDLGRKLL
ARWEELVLEHQFWVGLDLGSLDGEITAVANSLSKQYIVGTAYIFSWMSSYKMQRPTAMGS
PANVVGVFVTLEVHLTLQVAITLPESGGDEGECHECEYTCEKQLPPAPPLLEASGHDGSS
YRLNAAYEGVVSLDDINQFMIKIYQGMVKANNLKQCQPRAVA

Transcript Sequence

Transcript ID

Os06t0578700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:22522400:22526017:1 gene:Os06g0578700 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os06t0578700-01)
Sequence

GAGCATCAACCGAACGCAAGAATCACACACAACACTCGGTTAGACGTACGTACGATCACA
TTGCAGTAGAGATCGATGGGTAGACTCCATAATTTGTTGCTTCTGTTAGTGTGCTTCTTC
TCCACGCTATTGCTCGCACAGGTGATGAGTGCTGCTGCAGGGATGGCAGCAGTGAAAGTG
AGCACCACACCCATCTTCTCCAAGATCCCACGAGCTCAGACGACCAAGGATTTTCAGGTG
CTACTACGCATTGAGGCGCCACCACTAGTGGATCTCAAGGGCCGTGTCCCCATTGATCTT
GTCATGGTGCTCGACGTTGACGTCGAATCAGTGAGTCTGGAACCGGTGAAAAAAGCCATG
AAATTCGCCATCCAACAACTCAGTGATAAAGACTCTATCGCCATCTTTGGGCCATCCATG
AGCCGAGAGGTCATCCCTAAGTTTATGAGTATTCATGGTAGCCGAAGGGTTGCTGAGAAG
AAGGTAGATGAGTTGGAGGGCCGTCGCATTGCCGGTCCAGCAAGGTCAAGCTTGGATGAG
GCCCTCAAGATGCTGGAGGAGCAGCCGGCGAGCTCTTCCGACGGCCGCGCGAAGTTCATC
GTGTTGGTGACCGACGGAGAGGACATCACCCGCTTCAACTCCGGCATGCCGGAGTGGTTC
ACCGCCGCCCTGGCCAAGTACCCCGTGCACGCCTTCGGCCTGGGCGCCTCGCACGACGCC
GCGGCGCTGCGCCTCATCGCCCAGCGATCGCATGGCACCTACTCCTTCCTCGACGACGGC
AACGTCGACAAGGTCGCAAGCGCGCTCGCCCTGTGCCTCGGCGGTCTCAAGTCCGTCGCC
GCCGTCGGCGCGCGCGTCGTCCTCAAGGCGGCGAGCGGCAGCGGCGTGAGGATCGACAGG
ATCAGCTCCGGGGACTACGCGAGTTCAGTCTCCCAGGTCGACGGGGGCGCCTCCGGCGAG
ATCGTCATCGGCGCCCTCTACGCCGGCGAGGTCAAGAGCTTCGTCGTCCACCTCTACGTG
CCCGCCGCGCCGCCGGCATTGCGGACGGTGGAGGGCGTCTGCTGCGACCAGCAGCAGCTG
CTCGTCGCCAGCCTCGATGGCCAGCTGTACACTAGTGGCGGCGTGGACGTCGACGACGCA
GCAGCACCTGTTGATCTCGTCGTGGAGAGGCCTAACGCCGCCGTGCTGGTTCCCTCCGCC
ATTGTCGTCAACCAAATCTTCCAGTTCAGTGTGCTGAAGATGTTCGACACCTTCATCGAC
AAAGAGATCCTCCACCGCACTCCGGTGACCGGGTGGAACGACGTCGACGTCGACGACCTG
GGGAGGAAGCTGCTGGCGAGGTGGGAGGAGCTCGTGCTCGAGCACCAGTTCTGGGTCGGC
CTCGATCTGGGATCCCTCGACGGCGAGATCACCGCGGTGGCGAACAGCCTGAGCAAGCAG
TACATCGTTGGCACGGCGTACATATTCTCATGGATGTCGAGCTACAAGATGCAGCGGCCG
ACGGCGATGGGGTCGCCGGCGAACGTGGTGGGCGTGTTCGTGACGCTGGAGGTGCACCTG
ACGCTGCAGGTGGCGATCACGCTGCCGGAGAGCGGCGGCGACGAGGGTGAGTGCCACGAG
TGCGAGTACACCTGCGAGAAGCAGCTGCCGCCTGCGCCGCCGCTGCTGGAGGCGTCTGGA
CACGATGGCAGCAGCTACCGTCTCAACGCCGCGTACGAGGGCGTCGTATCGCTCGACGAC
ATCAACCAATTCATGATCAAAATCTACCAGGGCATGGTGAAAGCGAACAATTTGAAGCAA
TGCCAGCCACGTGCTGTCGCCTGATTAGTCTGCAAGCGGATTAATCCCTCTACTTTGTTG
AGCAATAATAATAATATGTCCATCGATCGATCGCTTGGTAGTGGCAGTTGCCTTATCAGC
AGGCAAGATTGACGAGGGCGTTTGTTCAGATTCGTATTTAAAAGTCTACTTTCTTTCTTT
AACGGAGATAGTATTAGCTCGGCTAATACTACTATAAAGATTGAGAATAATAAGGGATGT
AAGTGATAACTTTGTTCGTCGTCAATGCATGTAAGATCGAGTTTACACTTTATAGCAAGC
TAATTAAGCTCTGTTTATTGCC