Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0578100-00
CDS Infomation

cds chromosome:IRGSP-1.0:6:22488680:22491650:-1 gene:Os06g0578100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Retrotransposon protein. (Os06t0578100-00)
Sequence

ATGCAGGCGATGAGTGTAGCTCCTGTGAAAGTGAGCACCACGCCCATCTTCCCCACAATC
CCAAGAGCTCAGACGAACAAGGACTTCCAGGTGTTACTGCGTGTTGAGGCGCCACCGGCG
GCCGATCTCAACGGCCATGTCCCCATAGACGTCGTCGCAGTGCTCGATGTCAGCGGCAGC
ATGAATGATCCGGTGGCGGCGTCGCCGGAGAGCAATCTGCAGGCGACGAGGTTGGATGTG
CTCAAGGCGTCTATGAAGTTTATCATCAGGAAGCTTGACGACGGAGACCGCCTCTCCATT
GTGGCTTTTAACGATGGACCCGTCAAGGAATATAGCTCCGGCTTGTTGGATGTTTCTGGC
GATGGCCGGAGCATCGCCGGAAAAAAGATCGACCGACTTCAGGCCCGTGGTGGCAGTGGC
TCTGCGCTTATGCCCGAGTTGCAGGAGGCCGTCAAGATCCTGGATGAGCGGCAAGGCAAC
AGCCGGAACCGCGTAGGGTTCATCCTCCTCCTGACCGACGGCGACGACACGACCGGATTC
CGGTGGAGCCGCGACGTCATCCATGGCGCCGTCGGCAAGTACCCCGTCCACACCTTCGCC
CTGGGCGCGGCGCACGACCCGGAGGCGCTGCTCCACATCGCGCAAGAATCGCGCGGCACC
TACTCCTTCGTCGACGACGGCAACCTGGACAAGATCGCCGGCGCCCTCGCCGTGTGCCTC
GGCGGGCTCAAGACCGTCGCCGCCGTCGACACGCGCGTCAGCCTCAAGACTGCCGAGCTA
GGCGGCGCGCGGATAGTGCGCGTCGACTCTGGCGGCTACGAGAGCAGCGTTGCTTGCGGC
GGGGCCTCCGGTGAGGTCGTCGTCGGTGTTCTCTACGCCGGCGAGGTGAAGAGCTTCGTC
GTCCACCTCCATGTGCCTGCTGCTTCGTCGACGACGACCTTCTCGTCGGTGGAGTGCGGT
TACTGCGACGCCGCCGCCACGGTCTGCGACCATCACCACCACCACCATTGCCATCACCGT
CATCACCAGCAGCAGCTGCTCGCCATCGGCTACTCGTACAGCCACGCTCCGGGCGGCGAA
GCGGTGTCCATCGAAGGGCACGGCGTGTTCGTCGAGAGGCCCGAGGTGGCCGTCTTCTCC
GTCGACGGCGGCCGACAACGGCAAACCCTCCTCCCATCCCCCGTCGTGATGCAGCACATG
GTCCGGTTCGAGCTGCTGGAGCTCGTCGCCGGCTTCGCGGAAACCGAGATGCTGTCGAAG
AAGGGGACGATGCAGCTGCGCGGCGGCGGCGCGCGCGCCGGCGACGTGCTGCAGGGCAAG
TGGGAGGAGTTCCGGCGAGCCCGGCAGTTCTGGGGCGGGGTCGAGCTGGACGGCCTCGAG
GAGGATGTGGACGCCATGGTGGCCAGCCTCAGGAGCGGGCTAGCCTACGTCAGCTCGTGG
GTGTCGAGCCACCAGATGCAGCGCGCCACCGCCATGGGCTCGCCGGAGAAGGTGATCGCC
GAGTTCATGACGCCGGCGATGGTGATCATGCTGGAGGAGGCACGTAAGCTACCGTCGCCG
CTGCCAGCTGCGGCTGAGGCGGCGAGAGAGAGGCGGCCCGGCTGCAAGGGCGGCGGCGAT
CTCCATTACGTGATCCGGCAGCGGCTGGAGCTGTGGTCGAAGGTGAGACGCGAGGTGCCG
CTCATGTACCAGCCGTCGTCGGAGCAGGAAGACGTCCAGCTGACCGCCTTGTTTCGGGAG
GCGTCGCTGGAGGCCATCGACCGAGCAATGCACCACGACATCTATCTGGTACCTACTTTT
ACACCTTATTATCCTTTTCGTCGTAATAATACCACGAATTTAGACAGAAGTTTATCTACT
ACTCCCTCCGTTTTAAAATGTTTGACACCGTTGACTTTTAAGTACATGTTTGACCGTTCG
TTTTATTCAATAAAATTTATGAAATATGTAAAACTATATGTGTACATAAAAATATATTTA
ACAATGAATCAAATGATATGA

Peptide Sequence

PEP ID

Os06t0578100-00
PEP Infomation

pep chromosome:IRGSP-1.0:6:22488680:22491650:-1 gene:Os06g0578100 transcript:Os06t0578100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Retrotransposon protein. (Os06t0578100-00)
Sequence

MQAMSVAPVKVSTTPIFPTIPRAQTNKDFQVLLRVEAPPAADLNGHVPIDVVAVLDVSGS
MNDPVAASPESNLQATRLDVLKASMKFIIRKLDDGDRLSIVAFNDGPVKEYSSGLLDVSG
DGRSIAGKKIDRLQARGGSGSALMPELQEAVKILDERQGNSRNRVGFILLLTDGDDTTGF
RWSRDVIHGAVGKYPVHTFALGAAHDPEALLHIAQESRGTYSFVDDGNLDKIAGALAVCL
GGLKTVAAVDTRVSLKTAELGGARIVRVDSGGYESSVACGGASGEVVVGVLYAGEVKSFV
VHLHVPAASSTTTFSSVECGYCDAAATVCDHHHHHHCHHRHHQQQLLAIGYSYSHAPGGE
AVSIEGHGVFVERPEVAVFSVDGGRQRQTLLPSPVVMQHMVRFELLELVAGFAETEMLSK
KGTMQLRGGGARAGDVLQGKWEEFRRARQFWGGVELDGLEEDVDAMVASLRSGLAYVSSW
VSSHQMQRATAMGSPEKVIAEFMTPAMVIMLEEARKLPSPLPAAAEAARERRPGCKGGGD
LHYVIRQRLELWSKVRREVPLMYQPSSEQEDVQLTALFREASLEAIDRAMHHDIYLVPTF
TPYYPFRRNNTTNLDRSLSTTPSVLKCLTPLTFKYMFDRSFYSIKFMKYVKLYVYIKIYL
TMNQMI

Transcript Sequence

Transcript ID

Os06t0578100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:22488680:22491650:-1 gene:Os06g0578100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Retrotransposon protein. (Os06t0578100-00)
Sequence

GTATGCATCTGAAACTCTGAATGCAGGCGATGAGTGTAGCTCCTGTGAAAGTGAGCACCA
CGCCCATCTTCCCCACAATCCCAAGAGCTCAGACGAACAAGGACTTCCAGGTGTTACTGC
GTGTTGAGGCGCCACCGGCGGCCGATCTCAACGGCCATGTCCCCATAGACGTCGTCGCAG
TGCTCGATGTCAGCGGCAGCATGAATGATCCGGTGGCGGCGTCGCCGGAGAGCAATCTGC
AGGCGACGAGGTTGGATGTGCTCAAGGCGTCTATGAAGTTTATCATCAGGAAGCTTGACG
ACGGAGACCGCCTCTCCATTGTGGCTTTTAACGATGGACCCGTCAAGGAATATAGCTCCG
GCTTGTTGGATGTTTCTGGCGATGGCCGGAGCATCGCCGGAAAAAAGATCGACCGACTTC
AGGCCCGTGGTGGCAGTGGCTCTGCGCTTATGCCCGAGTTGCAGGAGGCCGTCAAGATCC
TGGATGAGCGGCAAGGCAACAGCCGGAACCGCGTAGGGTTCATCCTCCTCCTGACCGACG
GCGACGACACGACCGGATTCCGGTGGAGCCGCGACGTCATCCATGGCGCCGTCGGCAAGT
ACCCCGTCCACACCTTCGCCCTGGGCGCGGCGCACGACCCGGAGGCGCTGCTCCACATCG
CGCAAGAATCGCGCGGCACCTACTCCTTCGTCGACGACGGCAACCTGGACAAGATCGCCG
GCGCCCTCGCCGTGTGCCTCGGCGGGCTCAAGACCGTCGCCGCCGTCGACACGCGCGTCA
GCCTCAAGACTGCCGAGCTAGGCGGCGCGCGGATAGTGCGCGTCGACTCTGGCGGCTACG
AGAGCAGCGTTGCTTGCGGCGGGGCCTCCGGTGAGGTCGTCGTCGGTGTTCTCTACGCCG
GCGAGGTGAAGAGCTTCGTCGTCCACCTCCATGTGCCTGCTGCTTCGTCGACGACGACCT
TCTCGTCGGTGGAGTGCGGTTACTGCGACGCCGCCGCCACGGTCTGCGACCATCACCACC
ACCACCATTGCCATCACCGTCATCACCAGCAGCAGCTGCTCGCCATCGGCTACTCGTACA
GCCACGCTCCGGGCGGCGAAGCGGTGTCCATCGAAGGGCACGGCGTGTTCGTCGAGAGGC
CCGAGGTGGCCGTCTTCTCCGTCGACGGCGGCCGACAACGGCAAACCCTCCTCCCATCCC
CCGTCGTGATGCAGCACATGGTCCGGTTCGAGCTGCTGGAGCTCGTCGCCGGCTTCGCGG
AAACCGAGATGCTGTCGAAGAAGGGGACGATGCAGCTGCGCGGCGGCGGCGCGCGCGCCG
GCGACGTGCTGCAGGGCAAGTGGGAGGAGTTCCGGCGAGCCCGGCAGTTCTGGGGCGGGG
TCGAGCTGGACGGCCTCGAGGAGGATGTGGACGCCATGGTGGCCAGCCTCAGGAGCGGGC
TAGCCTACGTCAGCTCGTGGGTGTCGAGCCACCAGATGCAGCGCGCCACCGCCATGGGCT
CGCCGGAGAAGGTGATCGCCGAGTTCATGACGCCGGCGATGGTGATCATGCTGGAGGAGG
CACGTAAGCTACCGTCGCCGCTGCCAGCTGCGGCTGAGGCGGCGAGAGAGAGGCGGCCCG
GCTGCAAGGGCGGCGGCGATCTCCATTACGTGATCCGGCAGCGGCTGGAGCTGTGGTCGA
AGGTGAGACGCGAGGTGCCGCTCATGTACCAGCCGTCGTCGGAGCAGGAAGACGTCCAGC
TGACCGCCTTGTTTCGGGAGGCGTCGCTGGAGGCCATCGACCGAGCAATGCACCACGACA
TCTATCTGGTACCTACTTTTACACCTTATTATCCTTTTCGTCGTAATAATACCACGAATT
TAGACAGAAGTTTATCTACTACTCCCTCCGTTTTAAAATGTTTGACACCGTTGACTTTTA
AGTACATGTTTGACCGTTCGTTTTATTCAATAAAATTTATGAAATATGTAAAACTATATG
TGTACATAAAAATATATTTAACAATGAATCAAATGATATGA