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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0562200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:21556404:21557283:1 gene:Os06g0562200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9, pyrabactin resistance-like 9 description:Bet v I allergen family protein. (Os06t0562200-01)
Sequence

ATGGAGGCGCACGTGGAGAGGGCGCTCCGGGAGGGCCTGACGGAGGAGGAGAGGGCGGCG
CTGGAGCCGGCGGTGATGGCGCACCACACGTTCCCGCCCTCCACCACCACCGCCACCACG
GCGGCGGCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG
TGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGC
GCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCC
GGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATC
ATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCC
GTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTC
GTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTC
ACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCC
TCTGCTTCGCGGCGGCGCGACTAG

Peptide Sequence

PEP ID

Os06t0562200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:21556404:21557283:1 gene:Os06g0562200 transcript:Os06t0562200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9, pyrabactin resistance-like 9 description:Bet v I allergen family protein. (Os06t0562200-01)
Sequence

MEAHVERALREGLTEEERAALEPAVMAHHTFPPSTTTATTAAATCTSLVTQRVAAPVRAV
WPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHI
ISFRVVGGQHRLRNYRSVTSVTEFQPPAAGPGPAPPYCVVVESYVVDVPDGNTAEDTRMF
TDTVVKLNLQMLAAVAEDSSSASRRRD

Transcript Sequence

Transcript ID

Os06t0562200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:21556404:21557283:1 gene:Os06g0562200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9, pyrabactin resistance-like 9 description:Bet v I allergen family protein. (Os06t0562200-01)
Sequence

AACATCGCACGCACGCACGCGCTAGAGAAACTAAAGAGAGAGAGGTCGATCAGAAATCAA
TGGAGGCGCACGTGGAGAGGGCGCTCCGGGAGGGCCTGACGGAGGAGGAGAGGGCGGCGC
TGGAGCCGGCGGTGATGGCGCACCACACGTTCCCGCCCTCCACCACCACCGCCACCACGG
CGGCGGCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGT
GGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCG
CCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCG
GCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCA
TCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCG
TCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCG
TCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCA
CCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCT
CTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATG
GCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTCTTCTTTTTACTTTTTTTTTT
AGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAAC
AACTGTTGTGGCATAAGGAAGCCTGTTTTGGTTTGTACGG