Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0556600-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:21222683:21223744:1 gene:Os06g0556600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pollen allergen Phl p 11. (Os06t0556600-01)
Sequence

ATGGCGCGTCCTCGCTTCGCCACCACGGCGCCATTGTTGGCGCTCGCCGTCCTCGCCGCC
GTGGTGTCCGTCGCCGTCGCCACCGCTCCCGCCGGCAAGGACCCCGGCGGCTTCGTCGTC
ACCGGGCGCGTCTACTGCGACCCCTGCCGCGCCGGCTTCGAGACCAACGTCTCCAAAAGC
ATCCCAGGGGCGACGGTGTCGGTGGAGTGCAGGCACTACGGGGCGGGGAGGGAGAGCCTG
AAGGCGGAGGCGACGACGGACGAGAAGGGGTGGTACAAGGTGGAGATCGACCAGGACCAC
CAGGAGGAGATCTGCGAGGTGGTGCTGGACAAGAGCAGCGACCCGGCGTGCTCCGAGACG
GAGAAGACCCGCGACCGGTCCCGCGTCCCGCTCACCAGCAACAACGGCCTCAAGCAGAAC
GGCATCCGCTACGCCAACCCCATCGCCTTCTTCCGCAAGGAGCCCCTCGCCGACTGCGGC
TCCATCCTCCAGAAGTACGACCTCAAGGACGCCCCCGAGACCCCATGA

Peptide Sequence

PEP ID

Os06t0556600-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:21222683:21223744:1 gene:Os06g0556600 transcript:Os06t0556600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pollen allergen Phl p 11. (Os06t0556600-01)
Sequence

MARPRFATTAPLLALAVLAAVVSVAVATAPAGKDPGGFVVTGRVYCDPCRAGFETNVSKS
IPGATVSVECRHYGAGRESLKAEATTDEKGWYKVEIDQDHQEEICEVVLDKSSDPACSET
EKTRDRSRVPLTSNNGLKQNGIRYANPIAFFRKEPLADCGSILQKYDLKDAPETP

Transcript Sequence

Transcript ID

Os06t0556600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:21222683:21223744:1 gene:Os06g0556600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pollen allergen Phl p 11. (Os06t0556600-01)
Sequence

ACCTCCTCCCCCTCCACGCCATCCCCGACACCGATCGAGAGAGAGAGATCGCACCGATCG
ACGTACGGTACGAGACGACCATGGCGCGTCCTCGCTTCGCCACCACGGCGCCATTGTTGG
CGCTCGCCGTCCTCGCCGCCGTGGTGTCCGTCGCCGTCGCCACCGCTCCCGCCGGCAAGG
ACCCCGGCGGCTTCGTCGTCACCGGGCGCGTCTACTGCGACCCCTGCCGCGCCGGCTTCG
AGACCAACGTCTCCAAAAGCATCCCAGGGGCGACGGTGTCGGTGGAGTGCAGGCACTACG
GGGCGGGGAGGGAGAGCCTGAAGGCGGAGGCGACGACGGACGAGAAGGGGTGGTACAAGG
TGGAGATCGACCAGGACCACCAGGAGGAGATCTGCGAGGTGGTGCTGGACAAGAGCAGCG
ACCCGGCGTGCTCCGAGACGGAGAAGACCCGCGACCGGTCCCGCGTCCCGCTCACCAGCA
ACAACGGCCTCAAGCAGAACGGCATCCGCTACGCCAACCCCATCGCCTTCTTCCGCAAGG
AGCCCCTCGCCGACTGCGGCTCCATCCTCCAGAAGTACGACCTCAAGGACGCCCCCGAGA
CCCCATGATCATCATCATATATATGTTTCTCCTTAGCAGTGCATCAAACGTTCCTTCAAA
TTTGAGCCTCTCCGAAGCTCAAGATGGAGCCGCCGCCGCCCGTGTAGAAGTAAATTAATC
TACGATTGCAGCATGCAATAACGGAGTTTACATTGCCGATCGATCTGTTTTGTACGTACC
TAAGTAATTTGGAGACGCTGATGTGATTCTTTGTTCATTCATCAAGAGTCTTTGTGTGTG
ATTGTACCCTCCTCCTCTTGTTGCTCTGTAATTACCTACTCCACTATTACTAAGTACTTG
TTGATCTGCGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTC
CATCCATTTCATACT