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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0553200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:21006766:21008156:-1 gene:Os06g0553200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Protodermal Factor Like description:Similar to Meiosis 5. (Os06t0553200-01)
Sequence

ATGGGCAGCTGCAAGATTCTCCTGGTCACAGCTCTCCTGGTCGGCATTGCCTCCCAGCAG
AGCTCTGCCACCAGGAACCTGCACGGAGATCATCACGTCGCGGAAAAGAAGTTCGGCGGC
GGCGGCGGCGGCTACGGTGGCGGTGGCGGTGGAGGGTACGGTGGCGGTGGCGGCGGCGGC
GGCTACTCACCGTCGCCCACGACCGGTTTCACCGGGAGCTGCGATTTCTGGAAGAGCCAC
CCGGAGAAGATAATATCGTGCATCGGGTCGCTGGGGAGCATCGTGGGGTCGTTCGGGGAC
GTGTGCAGCGGCTTCTTCGGGAGCAAGCTGCAGACGCTGCAGGACGCGCTGTGCAGCACC
CGCAAGGACTGCTACGGCGACCTGCTCCGGGAGGGCGCCGCCGCGTACATCAACTCCGTG
GCCGCCAAGAAGCAGGCCAAGTTCGCCTACACCACGCAGCAGGTCAAGTCCTGCATCCTC
CTCGGCCTCACCTCCAAGGCCGCCGCCATCGAGCAGGCCGCCTTGTTCAAGAAGGCCAAC
CTCGCCTGCCACTACACCTAG

Peptide Sequence

PEP ID

Os06t0553200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:21006766:21008156:-1 gene:Os06g0553200 transcript:Os06t0553200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Protodermal Factor Like description:Similar to Meiosis 5. (Os06t0553200-01)
Sequence

MGSCKILLVTALLVGIASQQSSATRNLHGDHHVAEKKFGGGGGGYGGGGGGGYGGGGGGG
GYSPSPTTGFTGSCDFWKSHPEKIISCIGSLGSIVGSFGDVCSGFFGSKLQTLQDALCST
RKDCYGDLLREGAAAYINSVAAKKQAKFAYTTQQVKSCILLGLTSKAAAIEQAALFKKAN
LACHYT

Transcript Sequence

Transcript ID

Os06t0553200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:21006766:21008156:-1 gene:Os06g0553200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Protodermal Factor Like description:Similar to Meiosis 5. (Os06t0553200-01)
Sequence

ACTCAACCCAAGCATCTCTCTTCTTCACTAGCTACTTCTCCAAGTTGAAGAGATCAAAGC
TAGAATGGGCAGCTGCAAGATTCTCCTGGTCACAGCTCTCCTGGTCGGCATTGCCTCCCA
GCAGAGCTCTGCCACCAGGAACCTGCACGGAGATCATCACGTCGCGGAAAAGAAGTTCGG
CGGCGGCGGCGGCGGCTACGGTGGCGGTGGCGGTGGAGGGTACGGTGGCGGTGGCGGCGG
CGGCGGCTACTCACCGTCGCCCACGACCGGTTTCACCGGGAGCTGCGATTTCTGGAAGAG
CCACCCGGAGAAGATAATATCGTGCATCGGGTCGCTGGGGAGCATCGTGGGGTCGTTCGG
GGACGTGTGCAGCGGCTTCTTCGGGAGCAAGCTGCAGACGCTGCAGGACGCGCTGTGCAG
CACCCGCAAGGACTGCTACGGCGACCTGCTCCGGGAGGGCGCCGCCGCGTACATCAACTC
CGTGGCCGCCAAGAAGCAGGCCAAGTTCGCCTACACCACGCAGCAGGTCAAGTCCTGCAT
CCTCCTCGGCCTCACCTCCAAGGCCGCCGCCATCGAGCAGGCCGCCTTGTTCAAGAAGGC
CAACCTCGCCTGCCACTACACCTAGCTACCCATACCTCGCCGCCGGCCGGCCATCTCTCC
GGCCATCTCTCTCTCTTAGCTAGTTGGTAGCTAGTGTCGTCATGGTGTTGATGATGAATA
AGTCCTTGCATGGATGCGTCGTGGCAAACCATGCGTATATTATTCAAGAATTGTGTGAGT
GTTCAGATCTGACCTCAGCTGTGGCTTGTGTGCGTTTGCAGTTAAATTGATGAGGTGCAC
GGCGCCACGACGACGTCTCGTCGTCGGTGCTTAGTTGCATGCTTTGTTTGCTTTTCTTAG
TTTCTTGGCGATGTACTTATTAAGAGAATAAGATGAGTTTGATTTGGTTAGTGATGAACT
GGTCTCTGCTTTTACCT