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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0552700-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:20960706:20961819:1 gene:Os06g0552700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 25 description:Arbuscular mycorrhizal specific marker 25. (Os06t0552700-01)
Sequence

ATGGCACGGCGAGAAGTCGACGACTCCTACACCAACGGTTCCGTGGTCGAGGTCGTGTCC
ATAGAGGAAGGCAGCAAGATGGACAAGGAGGATGACCACCAAAACCCGCAGGCGCCTGAC
GGCGGCGACGTCGTGGTTTGTGGCATGCCCATGTCGTTCACCTTCCTCCAGATGCTGCTC
GCCGAGTTCTTGGCCACGTTCTTCCTGATGTTCGCGGGGCTGGGCGCCATCACGGTGGAG
GAGAAGAAGGGCGCGGTGACGTTCCCGGGGGTGGCCGTGGCGTGGGGCGCGGCGGTCATG
GCGATGGTGTACGCCGTCGGCCACGTCTCCGGCGCGCACCTCAACCCGGCCGTCACCCTC
GGCTTCGCCGTCGCCGGCCGCTTCCCGTGGAGGCGCGCGCCCGCGTACGCGCTGGCGCAG
ACGGCCGCCGCCACGGCGGCGAGCGTGGTGCTGCGGCTCATGTTCGGCGGCCGGCACGCG
CCCGTGCCGGCCACGCTGCCGGGCGGCGCCCACGCGCAGTCGCTCGTCATCGAGTTCGTC
ATCACCTTCTACCTCATGTTCGTCATCATGGCTGTCGCCACCGATGACCAAGCGGTGGGT
CATATGGCTGGAGTGGCTGTGGGTGGAACCATCATGCTCAATGTGCTGTTTGCTGGGCCG
GTGTCGGGGGCGTCGATGAACCCGGCGAGGAGCATTGGGCCGGCGTTGGTGGGGAGCAAG
TACACGGCGCTGTGGGTGTACATCTTGGGACCGTTCGCCGGTGCGGCAGCCGGAGCTTGG
GCCTACAGCCTCATCCGCCTCACTGGCGACCGCACGGATTGA

Peptide Sequence

PEP ID

Os06t0552700-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:20960706:20961819:1 gene:Os06g0552700 transcript:Os06t0552700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 25 description:Arbuscular mycorrhizal specific marker 25. (Os06t0552700-01)
Sequence

MARREVDDSYTNGSVVEVVSIEEGSKMDKEDDHQNPQAPDGGDVVVCGMPMSFTFLQMLL
AEFLATFFLMFAGLGAITVEEKKGAVTFPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTL
GFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFV
ITFYLMFVIMAVATDDQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSK
YTALWVYILGPFAGAAAGAWAYSLIRLTGDRTD

Transcript Sequence

Transcript ID

Os06t0552700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20960706:20961819:1 gene:Os06g0552700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 25 description:Arbuscular mycorrhizal specific marker 25. (Os06t0552700-01)
Sequence

ATGGCACGGCGAGAAGTCGACGACTCCTACACCAACGGTTCCGTGGTCGAGGTCGTGTCC
ATAGAGGAAGGCAGCAAGATGGACAAGGAGGATGACCACCAAAACCCGCAGGCGCCTGAC
GGCGGCGACGTCGTGGTTTGTGGCATGCCCATGTCGTTCACCTTCCTCCAGATGCTGCTC
GCCGAGTTCTTGGCCACGTTCTTCCTGATGTTCGCGGGGCTGGGCGCCATCACGGTGGAG
GAGAAGAAGGGCGCGGTGACGTTCCCGGGGGTGGCCGTGGCGTGGGGCGCGGCGGTCATG
GCGATGGTGTACGCCGTCGGCCACGTCTCCGGCGCGCACCTCAACCCGGCCGTCACCCTC
GGCTTCGCCGTCGCCGGCCGCTTCCCGTGGAGGCGCGCGCCCGCGTACGCGCTGGCGCAG
ACGGCCGCCGCCACGGCGGCGAGCGTGGTGCTGCGGCTCATGTTCGGCGGCCGGCACGCG
CCCGTGCCGGCCACGCTGCCGGGCGGCGCCCACGCGCAGTCGCTCGTCATCGAGTTCGTC
ATCACCTTCTACCTCATGTTCGTCATCATGGCTGTCGCCACCGATGACCAAGCGGTGGGT
CATATGGCTGGAGTGGCTGTGGGTGGAACCATCATGCTCAATGTGCTGTTTGCTGGGCCG
GTGTCGGGGGCGTCGATGAACCCGGCGAGGAGCATTGGGCCGGCGTTGGTGGGGAGCAAG
TACACGGCGCTGTGGGTGTACATCTTGGGACCGTTCGCCGGTGCGGCAGCCGGAGCTTGG
GCCTACAGCCTCATCCGCCTCACTGGCGACCGCACGGATTGA