Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0552400-02
CDS Infomation	cds chromosome:IRGSP-1.0:6:20946146:20952655:-1 gene:Os06g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)
Sequence	ATGGCGGCCAACGATCGGCTCTACCCTCCGATCGACCCGTACGCCCTGGAGCCACCGCAG TTCGGCGACGACGCGGCTTGCGGAGGCGGTGGCGGTGGCGGCGAGGTTAGGGTTCGTGAC CCGTCGGCGGTGATGTGGGACGAGGAGCCCGAGGCGTCCCCCTCCTCCCCGGAGGAGCCG GTGACTGAGGGAACCCACACATTTGAGCAAGGGCCAAAGGTTCATCTTGCTGAAAATAAC GTGGTAGGCAGTGCTGGTGTTGGTGATGTCTATGAATACAGCAGGGAAATGACCACCATG CAGGAGTTAGTAGAAAACACTTACTATGATTGTGCTCTTCGTGATCAAACTGGCATGTGG GTACCTCCATCGGTTCCACCGATGACAAAGCATGACCACGAGGAGTGGCAAAAGGGCTTT GGTGCTAATGGTGGGTACTTCGCTGAAGAAGATTTGTGGGATATAGATGAAGAAAACAAG GAGATGACAATGTGGGATGTGCTTGCTGCGATGGTTTCTGCGGGAAAAGATAAAGTATTG TCTGTTGTATCATATGATTTCGGAAGGCAAGGCATGTCTCTGATTTCACATTTGCTTCTT GAAGAGGCTTGTAAGGATAAGGCTGATACACTTGAAGATGCTAGTGTTGGTCTCGAACAT GCACTCCTTGAGGCAGAACCAACAGTCTGGCTGCCTGACAGTGCTGCTCCTTCTTGCATG CTTTGTGGAGCTCGTTTTCATCCAATAATTTGCTCCCGCCATCATTGTCGTTTCTGTGGT GGACTATTCTGTGGTGGTTGCTCAAAGGGTAGAAGCTTGATGCCTCCAAAATTCAGCACT TCAGAACCTCAAAGGGTTTGTGATGTTTGTGGAGTACGTCTTGAGTGTATTCAGCCTTAT TTGATGAATAAGATCAGCCGTGCTTGTCAGATTCCAACAAATGATTTGACAGACCTGAGC ACCTTGAGGTCGTGGTTAAACTTACCATGGGCACGCACGATGGAATATGAGATATACAAG GCTGTAAATTCTATATATGGATATTTTAAGGTTGGAAGTTTGAAACCGGAGAAGTCAATC CCTGATTCGATTCTTAGACAAGCAAAAGGACTTGCTATAATTACTGTGGTAAATGTTGGA ATGATGGTCACATACAAAATTGGTACTGGATTGGTTGTTGCTCGAAGGGCGGATGGTTCC TGGTCACCTCCTTCTGCCATCTCTACTTATGGTGTTGGATATGGAGTTCAGGCTGGAGGT GAGTTAGCCGACTACATCATTGTTCTGAGGAATACTGATGCCATCAGAACTTTCAGTGGA AATGCACACCTGTCAGTTGGGGCTGGCATTAGTGCTTCTGCTGGTCATCTTGGGCGAGTG GCAGAGGCTGATTTCCGTGCTGGTGATGGTGGTTATGCAGCCTGTTACACATACAGTTGC AGCAAAGGGGCATTTGTGGGCTGTGCACTCAATGGAAGTGTTGTATCAACTCGACATTCG GCGAATGCCCAATTTTATGGTGGTCCAATAAAGGCATCAGAAATCCTTCTTGGTTCAGTG AGCAGGCCAGCTGCTGCCGCTACCCTCTACAGAGCTCTGTCCAAATTGTTTGAGAAGGTC GAAAATTACTCCTCTCCTCTAGATTTCTGA

Peptide Sequence

PEP ID	Os06t0552400-02
PEP Infomation	pep chromosome:IRGSP-1.0:6:20946146:20952655:-1 gene:Os06g0552400 transcript:Os06t0552400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)
Sequence	MAANDRLYPPIDPYALEPPQFGDDAACGGGGGGGEVRVRDPSAVMWDEEPEASPSSPEEP VTEGTHTFEQGPKVHLAENNVVGSAGVGDVYEYSREMTTMQELVENTYYDCALRDQTGMW VPPSVPPMTKHDHEEWQKGFGANGGYFAEEDLWDIDEENKEMTMWDVLAAMVSAGKDKVL SVVSYDFGRQGMSLISHLLLEEACKDKADTLEDASVGLEHALLEAEPTVWLPDSAAPSCM LCGARFHPIICSRHHCRFCGGLFCGGCSKGRSLMPPKFSTSEPQRVCDVCGVRLECIQPY LMNKISRACQIPTNDLTDLSTLRSWLNLPWARTMEYEIYKAVNSIYGYFKVGSLKPEKSI PDSILRQAKGLAIITVVNVGMMVTYKIGTGLVVARRADGSWSPPSAISTYGVGYGVQAGG ELADYIIVLRNTDAIRTFSGNAHLSVGAGISASAGHLGRVAEADFRAGDGGYAACYTYSC SKGAFVGCALNGSVVSTRHSANAQFYGGPIKASEILLGSVSRPAAAATLYRALSKLFEKV ENYSSPLDF

Transcript Sequence

Transcript ID	Os06t0552400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:20946146:20952655:-1 gene:Os06g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)
Sequence	AATCGAACTCAAATCAATTCCCTCACGAAATCCCCAAAAATCCCCAAATCCTCACGCGGC CACTCGATTTGATCATGGCGGCCAACGATCGGCTCTACCCTCCGATCGACCCGTACGCCC TGGAGCCACCGCAGTTCGGCGACGACGCGGCTTGCGGAGGCGGTGGCGGTGGCGGCGAGG TTAGGGTTCGTGACCCGTCGGCGGTGATGTGGGACGAGGAGCCCGAGGCGTCCCCCTCCT CCCCGGAGGAGCCGGTGACTGAGGGAACCCACACATTTGAGCAAGGGCCAAAGGTTCATC TTGCTGAAAATAACGTGGTAGGCAGTGCTGGTGTTGGTGATGTCTATGAATACAGCAGGG AAATGACCACCATGCAGGAGTTAGTAGAAAACACTTACTATGATTGTGCTCTTCGTGATC AAACTGGCATGTGGGTACCTCCATCGGTTCCACCGATGACAAAGCATGACCACGAGGAGT GGCAAAAGGGCTTTGGTGCTAATGGTGGGTACTTCGCTGAAGAAGATTTGTGGGATATAG ATGAAGAAAACAAGGAGATGACAATGTGGGATGTGCTTGCTGCGATGGTTTCTGCGGGAA AAGATAAAGTATTGTCTGTTGTATCATATGATTTCGGAAGGCAAGGCATGTCTCTGATTT CACATTTGCTTCTTGAAGAGGCTTGTAAGGATAAGGCTGATACACTTGAAGATGCTAGTG TTGGTCTCGAACATGCACTCCTTGAGGCAGAACCAACAGTCTGGCTGCCTGACAGTGCTG CTCCTTCTTGCATGCTTTGTGGAGCTCGTTTTCATCCAATAATTTGCTCCCGCCATCATT GTCGTTTCTGTGGTGGACTATTCTGTGGTGGTTGCTCAAAGGGTAGAAGCTTGATGCCTC CAAAATTCAGCACTTCAGAACCTCAAAGGGTTTGTGATGTTTGTGGAGTACGTCTTGAGT GTATTCAGCCTTATTTGATGAATAAGATCAGCCGTGCTTGTCAGATTCCAACAAATGATT TGACAGACCTGAGCACCTTGAGGTCGTGGTTAAACTTACCATGGGCACGCACGATGGAAT ATGAGATATACAAGGCTGTAAATTCTATATATGGATATTTTAAGGTTGGAAGTTTGAAAC CGGAGAAGTCAATCCCTGATTCGATTCTTAGACAAGCAAAAGGACTTGCTATAATTACTG TGGTAAATGTTGGAATGATGGTCACATACAAAATTGGTACTGGATTGGTTGTTGCTCGAA GGGCGGATGGTTCCTGGTCACCTCCTTCTGCCATCTCTACTTATGGTGTTGGATATGGAG TTCAGGCTGGAGGTGAGTTAGCCGACTACATCATTGTTCTGAGGAATACTGATGCCATCA GAACTTTCAGTGGAAATGCACACCTGTCAGTTGGGGCTGGCATTAGTGCTTCTGCTGGTC ATCTTGGGCGAGTGGCAGAGGCTGATTTCCGTGCTGGTGATGGTGGTTATGCAGCCTGTT ACACATACAGTTGCAGCAAAGGGGCATTTGTGGGCTGTGCACTCAATGGAAGTGTTGTAT CAACTCGACATTCGGCGAATGCCCAATTTTATGGTGGTCCAATAAAGGCATCAGAAATCC TTCTTGGTTCAGTGAGCAGGCCAGCTGCTGCCGCTACCCTCTACAGAGCTCTGTCCAAAT TGTTTGAGAAGGTCGAAAATTACTCCTCTCCTCTAGATTTCTGACACACATTGTGTCCCC TGGTGATTACCCAGTGGTAACTCTAGGTATTGCTTTGTGCTCTCTGCTTACTCCTGGGTG GGTGATTTATCAACTGTACAGTTTGCCATTCGTTGCCATCAAATAGATCATCTCTCCAGT GCCACAAACAGAAAAACCACTCTGTAAATGTTGTATATATAATTGTTACGTTTGCGTGAA TCATGATAAATGAAAAGAAAAGAAAAGAATCATTTGTTCTG