Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0552400-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:20946146:20952716:-1 gene:Os06g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)
Sequence	ATGGCGGCCAACGATCGGCTCTACCCTCCGATCGACCCGTACGCCCTGGAGCCACCGCAG TTCGGCGACGACGCGGCTTGCGGAGGCGGTGGCGGTGGCGGCGAGGTTAGGGTTCGTGAC CCGTCGGCGGTGATGTGGGACGAGGAGCCCGAGGCGTCCCCCTCCTCCCCGGAGGAGCCG GTGACTGAGGGAACCCACACATTTGAGCAAGGGCCAAAGGTTCATCTTGCTGAAAATAAC GTGGTAGGCAGTGCTGGTGTTGGTGATGTCTATGAATACAGCAGGGAAATGACCACCATG CAGGAGTTAGTAGAAAACACTTACTATGATTGTGCTCTTCGTGATCAAACTGGCATGTGG GTACCTCCATCGGTTCCACCGATGACAAAGCATGACCACGAGGAGTGGCAAAAGGGCTTT GGTGCTAATGGTGGGTACTTCGCTGAAGAAGATTTGTGGGATATAGATGAAGAAAACAAG GAGATGACAATGTGGGATGTGCTTGCTGCGATGGTTTCTGCGGGAAAAGATAAAGTATTG TCTGTTGTATCATATGATTTCGGAAGGCAAGGCATGTCTCTGATTTCACATTTGCTTCTT GAAGAGGCTTGTAAGGATAAGGCTGATACACTTGAAGATGCTAGTGTTGGTCTCGAACAT GCACTCCTTGAGGCAGAACCAACAGTCTGGCTGCCTGACAGTGCTGCTCCTTCTTGCATG CTTTGTGGAGCTCGTTTTCATCCAATAATTTGCTCCCGCCATCATTGTCGTTTCTGTGGT GGACTATTCTGTGGTGGTTGCTCAAAGGGTAGAAGCTTGATGCCTCCAAAATTCAGCACT TCAGAACCTCAAAGGGTTTGTGATGTTTGTGGAGTACGTCTTGAGTGTATTCAGCCTTAT TTGATGAATAAGATCAGCCGTGCTTGTCAGATTCCAACAAATGATTTGACAGACCTGAGC ACCTTGAGGTCGTGGTTAAACTTACCATGGGCACGCACGATGGAATATGAGATATACAAG GCTGTAAATTCTATATATGGATATTTTAAGGTATGGCCATCCTATAATTCTAATACCTGT CCGTGTTATAACTTGGTTGCTTTGCATTCCTCTAATTTTTGTCTGGAACTCTGTATTCTC ATGTATATCGCCCCAAAATGTATGTTGTTATGCTTGTTTGCTTTCTGA

Peptide Sequence

PEP ID	Os06t0552400-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:20946146:20952716:-1 gene:Os06g0552400 transcript:Os06t0552400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)
Sequence	MAANDRLYPPIDPYALEPPQFGDDAACGGGGGGGEVRVRDPSAVMWDEEPEASPSSPEEP VTEGTHTFEQGPKVHLAENNVVGSAGVGDVYEYSREMTTMQELVENTYYDCALRDQTGMW VPPSVPPMTKHDHEEWQKGFGANGGYFAEEDLWDIDEENKEMTMWDVLAAMVSAGKDKVL SVVSYDFGRQGMSLISHLLLEEACKDKADTLEDASVGLEHALLEAEPTVWLPDSAAPSCM LCGARFHPIICSRHHCRFCGGLFCGGCSKGRSLMPPKFSTSEPQRVCDVCGVRLECIQPY LMNKISRACQIPTNDLTDLSTLRSWLNLPWARTMEYEIYKAVNSIYGYFKVWPSYNSNTC PCYNLVALHSSNFCLELCILMYIAPKCMLLCLFAF

Transcript Sequence

Transcript ID	Os06t0552400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:20946146:20952716:-1 gene:Os06g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)
Sequence	TTTTCAACTTATTTTGCAAGCCGTCTCCCTCCTCCTCCTCCCACGTCTCCGCTTCCAATC CAATCGAACTCAAATCAATTCCCTCACGAAATCCCCAAAAATCCCCAAATCCTCACGCGG CCACTCGATTTGATCATGGCGGCCAACGATCGGCTCTACCCTCCGATCGACCCGTACGCC CTGGAGCCACCGCAGTTCGGCGACGACGCGGCTTGCGGAGGCGGTGGCGGTGGCGGCGAG GTTAGGGTTCGTGACCCGTCGGCGGTGATGTGGGACGAGGAGCCCGAGGCGTCCCCCTCC TCCCCGGAGGAGCCGGTGACTGAGGGAACCCACACATTTGAGCAAGGGCCAAAGGTTCAT CTTGCTGAAAATAACGTGGTAGGCAGTGCTGGTGTTGGTGATGTCTATGAATACAGCAGG GAAATGACCACCATGCAGGAGTTAGTAGAAAACACTTACTATGATTGTGCTCTTCGTGAT CAAACTGGCATGTGGGTACCTCCATCGGTTCCACCGATGACAAAGCATGACCACGAGGAG TGGCAAAAGGGCTTTGGTGCTAATGGTGGGTACTTCGCTGAAGAAGATTTGTGGGATATA GATGAAGAAAACAAGGAGATGACAATGTGGGATGTGCTTGCTGCGATGGTTTCTGCGGGA AAAGATAAAGTATTGTCTGTTGTATCATATGATTTCGGAAGGCAAGGCATGTCTCTGATT TCACATTTGCTTCTTGAAGAGGCTTGTAAGGATAAGGCTGATACACTTGAAGATGCTAGT GTTGGTCTCGAACATGCACTCCTTGAGGCAGAACCAACAGTCTGGCTGCCTGACAGTGCT GCTCCTTCTTGCATGCTTTGTGGAGCTCGTTTTCATCCAATAATTTGCTCCCGCCATCAT TGTCGTTTCTGTGGTGGACTATTCTGTGGTGGTTGCTCAAAGGGTAGAAGCTTGATGCCT CCAAAATTCAGCACTTCAGAACCTCAAAGGGTTTGTGATGTTTGTGGAGTACGTCTTGAG TGTATTCAGCCTTATTTGATGAATAAGATCAGCCGTGCTTGTCAGATTCCAACAAATGAT TTGACAGACCTGAGCACCTTGAGGTCGTGGTTAAACTTACCATGGGCACGCACGATGGAA TATGAGATATACAAGGCTGTAAATTCTATATATGGATATTTTAAGGTATGGCCATCCTAT AATTCTAATACCTGTCCGTGTTATAACTTGGTTGCTTTGCATTCCTCTAATTTTTGTCTG GAACTCTGTATTCTCATGTATATCGCCCCAAAATGTATGTTGTTATGCTTGTTTGCTTTC TGACAAATATGTCTGCTTAACTAAAAATTGTTGACTGTCTATTTTTATCAAGTTCATGAC TATCAAATTGGTACTAGGAACCAACTGAACATGCCTAAAATTCCAATTCTTCTGCGCAGC TGAACTTTACACAACACAACCGAAATCGCGTTTGCTATAACTCTAGCCAGCTTTAGTCCA CCACATACTTCATATTCAAAACCATTGCAGCAAGGTTGATAATCCAAGTTCTTAATTTCC TATCAAACCTATACTCAGCCAAACCATTTTTCTTTCAAAGCCTTTTCATTAGTCATTATG TTCCTTTTACCATTCCAGGCCATGGTGAGAGCTTACATGATTGTTCTATTCTATCCACAA TGTAAAAAATTCTGGTGTCATGCTAACAATTATTTTCACAAACCAGCATCACATGAAGTT TTAATTTGAACATTTATTAGTGTGAGCATTTATTCTGGATTTCAGATGATTTTGTAGGTT TAAATCCCAGCATATCCTTTGTAGTTCCTGAGGAAGAAAATAAGTGGTGTGGTCTGTATA GCATTTTCTAGAAGACCCTTTTGAAATTCAAATGAATCCATTCCTTTTGCCTTTGACAAT GTTGAGATTGCACTATGGAAATTTCACCTTCTCTTTTCCAGCTACACTAAGGCTGGGTTC GTTTCCAAGTTTTCCCAACTCACCTCTCTCTTTTTCCGTGCGCACGCTTTTCAAACTGAT AAACGGTGTGTTTTTTGCAAAAATTCTGTACGAAAGTTGCTTTAAAAAATCATATTACTC CATTTTTCAAAAAAAAAAGATTAATACTTAATTAATCGTGCGCTAATGAGTTGCTCCGTT TTGCGTGCGCGAGGGATTAGTTCCCATCCCCAAGTGCCGAACACAGCCACTAAATGCTGC TATGAAGCATTGTTAGCTATTCAGTGTTGACCACTTCATATATTCAATTACAACCTGTTC TTAAATTTGTGAGACCATGATAAAGTTTTAAGACTTTTGTCCAGCTTCTTGTTCGATCAG TCATTTTGGAATCAGTTAGAACACTAATCGCATTTTGTGTGCTTCAATGCAATTTTAAGG TTGGAAGTTTGAAACCGGAGAAGTCAATCCCTGATTCGATTCTTAGACAAGCAAAAGGAC TTGCTATAATTACTGTGGTAAATGTTGGAATGATGGTCACATACAAAATTGGTACTGGAT TGGTTGTTGCTCGAAGGGCGGATGGTTCCTGGTCACCTCCTTCTGCCATCTCTACTTATG GTGTTGGATATGGAGTTCAGGCTGGAGGTGAGTTAGCCGACTACATCATTGTTCTGAGGA ATACTGATGCCATCAGAACTTTCAGTGGAAATGCACACCTGTCAGTTGGGGCTGGCATTA GTGCTTCTGCTGGTCATCTTGGGCGAGTGGCAGAGGCTGATTTCCGTGCTGGTGATGGTG GTTATGCAGCCTGTTACACATACAGTTGCAGCAAAGGGGCATTTGTGGGCTGTGCACTCA ATGGAAGTGTTGTATCAACTCGACATTCGGCGAATGCCCAATTTTATGGTGGTCCAATAA AGGCATCAGAAATCCTTCTTGGTTCAGTGAGCAGGCCAGCTGCTGCCGCTACCCTCTACA GAGCTCTGTCCAAATTGTTTGAGAAGGTCGAAAATTACTCCTCTCCTCTAGATTTCTGAC ACACATTGTGTCCCCTGGTGATTACCCAGTGGTAACTCTAGGTATTGCTTTGTGCTCTCT GCTTACTCCTGGGTGGGTGATTTATCAACTGTACAGTTTGCCATTCGTTGCCATCAAATA GATCATCTCTCCAGTGCCACAAACAGAAAAACCACTCTGTAAATGTTGTATATATAATTG TTACGTTTGCGTGAATCATGATAAATGAAAAGAAAAGAAAAGAATCATTTGTTCTG