Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0549900-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:20832520:20834491:-1 gene:Os06g0549900 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD linked oxidase, N-terminal domain containing protein. (Os06t0549900-01)
Sequence

ATGCACGACGCAAACATGGCCATGTCGTCGCGAAGCTTAGGCGCCCTAGCCGCCTTCGTC
TTCCTCTGCTCAGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAA
TGCCTCTCGGCGAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACG
TCGGTGCTGGACGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTC
TGGATCATCACGCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGG
AACGGCGTCCGCCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGG
TCGGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTC
GACGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTAC
GCCATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGC
GTCGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCC
GCCGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAAC
TCCATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATC
GTGCTCTCCTGGAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTC
CCGGTGACCGTGAGCCAGGGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCGCCG
TCGCTCCCCGACGACCTGTTCATCCGCGTGCTCGTCCAGGGCCAGAGGGCCAGCTTCCAG
TCCCTCTACCTCGGCACCTGCGACGCGCTGCTGCCGGTGATGCGCAGCCGCTTCCCGGAG
CTCGGCATGAACCGGTCGGACTGCAGGGAGATGACTTGGATCCAGTCCGTCCCCTACATC
TACCTCGGCAGCAGCGCCACCGTGGAGGACATCCTGAACCGGACCATCGCCATGGACACC
TCCAACAAGGCCACCTCCGACTACGTCCGGCAAGCCATCGGCAGGGACACGTGGAGCGCC
ATCTTCGGGTGGCTCGCGCGGCCCAACGCCGGGCTGATGATCCTGGACCCGTACGGCGGG
CAGATCGGCAGCGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTCTAC
AACATCCAGTACATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAG
AGGGCGTGGATCAGGGACTTCTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGG
GAGGCGTACGCCAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGC
GTCAGCAGCTACGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAG
CGGCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGC
ATCCCGCCACTTGTCGCCGGAAAATGA

Peptide Sequence

PEP ID

Os06t0549900-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:20832520:20834491:-1 gene:Os06g0549900 transcript:Os06t0549900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD linked oxidase, N-terminal domain containing protein. (Os06t0549900-01)
Sequence

MHDANMAMSSRSLGALAAFVFLCSAASMSSSMAATDSFLQCLSASIPSQLLYTQSSPSYT
SVLDAGIRNPKFLTNTTRPVWIITPTNASHVQAAVLCGRRNGVRLRIRSGGHDYEGLSYR
SERPETFAVLDLVNIRAVRVDAASATAWVDSGATLGEMYYAIGKAGGRIAFPAGLCPTVG
VGGHFSGGGFGMLLRKYGLAADNVVDAVLVDAKGRLLDKNSMGSDVFWALRGGAGESFGI
VLSWKVKLVAVPPTVTVFNVPVTVSQGAIDVVTRWQAVAPSLPDDLFIRVLVQGQRASFQ
SLYLGTCDALLPVMRSRFPELGMNRSDCREMTWIQSVPYIYLGSSATVEDILNRTIAMDT
SNKATSDYVRQAIGRDTWSAIFGWLARPNAGLMILDPYGGQIGSVAEAATPFPHRGGVLY
NIQYMNFWSAAGGGGGGAAQRAWIRDFYAFMAPFVSKDPREAYANYRDLDLGENVVGAGG
VSSYDAGKVWGEKYFRGNYQRLAMAKAQIDADDYFRNEQSIPPLVAGK

Transcript Sequence

Transcript ID

Os06t0549900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20832520:20834491:-1 gene:Os06g0549900 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAD linked oxidase, N-terminal domain containing protein. (Os06t0549900-01)
Sequence

AACAACAATGCATCGTTCGTTCGTTGCAAACAGCAGCTAGTACGTGTTCGATCGTTGCAT
GCACGACGCAAACATGGCCATGTCGTCGCGAAGCTTAGGCGCCCTAGCCGCCTTCGTCTT
CCTCTGCTCAGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAATG
CCTCTCGGCGAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACGTC
GGTGCTGGACGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTCTG
GATCATCACGCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGGAA
CGGCGTCCGCCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTC
GGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGA
CGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGC
CATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGT
CGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGC
CGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTC
CATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATCGT
GCTCTCCTGGAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTCCC
GGTGACCGTGAGCCAGGGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCGCCGTC
GCTCCCCGACGACCTGTTCATCCGCGTGCTCGTCCAGGGCCAGAGGGCCAGCTTCCAGTC
CCTCTACCTCGGCACCTGCGACGCGCTGCTGCCGGTGATGCGCAGCCGCTTCCCGGAGCT
CGGCATGAACCGGTCGGACTGCAGGGAGATGACTTGGATCCAGTCCGTCCCCTACATCTA
CCTCGGCAGCAGCGCCACCGTGGAGGACATCCTGAACCGGACCATCGCCATGGACACCTC
CAACAAGGCCACCTCCGACTACGTCCGGCAAGCCATCGGCAGGGACACGTGGAGCGCCAT
CTTCGGGTGGCTCGCGCGGCCCAACGCCGGGCTGATGATCCTGGACCCGTACGGCGGGCA
GATCGGCAGCGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTCTACAA
CATCCAGTACATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAGAG
GGCGTGGATCAGGGACTTCTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGGGA
GGCGTACGCCAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGT
CAGCAGCTACGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAGCG
GCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGCAT
CCCGCCACTTGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTC
CGTCACATAAAAAATAATCTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAA
ATTAGTTTTTTATGAGATGGAGGGAGTAGTGCATGGCAGACAGTCAAACTAATAGCTGTA
AAAATCTTTGGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACGCCGTCTATATGT
TTGAAAATTCATCACTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTGCGGAT
CGATGTACTATCTTTCACATAAGCTGAGCTTATTGCGTGCTCCATTCGTTGT