Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0547100-00
CDS Infomation

cds chromosome:IRGSP-1.0:6:20690576:20691745:-1 gene:Os06g0547100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:class III peroxidase 87 description:Similar to peroxidase 52. (Os06t0547100-00)
Sequence

ATGGGTTTCTTGTTTGCCAGGAGCAGCGGCTACAGCTTTGTTGCTCTTGCCCTCCTGGCG
TGCGTGCTGCTGGCGCCGTGCCAGGCGGCGAAGGCGGGGCTCTCGATCAAGTTCTACGCC
AAGACGTGCCCCGGCGTGGACACCATCGTGCGGTCGGTGGTGGCGCAGGCCGTCGCCAAG
GAGCCCCGGATGGGCGCCTCCATCATCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGG
TGCGACGCGTCCATCCTCCTCGACGACACGCTGACGTTCACAGGCGAGAAGAACGCCGGC
GCCAACATCAACTCCGTGCGCGGGTACGAGGTCATCGACGCCATCAAGTCCCAGGTCGAG
GCGGCCTGCAAGGGCGTCGTCTCCTGCGCCGATATCGTCGCGCTGGCGTCTCGCGACGCC
GTAAACTTGCTCGGGGGACCGACGTGGAACGTGCAGCTGGGCAGGAAGGACTCGCGCACG
GCGAGCGGGACCGCGGCGAACGCCAACCTGCCCGGCCCGGCGTCCAGCGGGGCGTCGCTC
GTGGCAGCGTTCGCGGGGAAGGGCCTCTCGGCGCGCGAGATGACGGCGCTGTCCGGGGCG
CACACCGTGGGGCGGGCGCGCTGCCTCATGTTCCGCGGCCGCATCTACGGGGAGGCCAAC
ATCAACGCCACGTTCGCCGCCGCGCTGCGGCAGACGTGCCCGCAGTCCGGCGGCGGCGAC
GGCAACCTAGCGCCGTTCGACGACCAGACGCCCGACGCGTTCGACAACGCCTACTTCAAG
AACCTGGTGGCGCAGCGCGGCCTGCTGCACTCCGACCAGGAGCTGTTCAACGGCGGGTCG
CAGGACGCGCTGGTGAGGAAGTACGCCGGGAACGCCGGCATGTTCGCCGGCGACTTCGCC
AAGGCGATGGTGAAGATGGGCGGCCTCATGCCGGCGGCCGGGACGCCGACGGAGGTCAGG
CTGAACTGCCGGAAGGTGAACTAA

Peptide Sequence

PEP ID

Os06t0547100-00
PEP Infomation

pep chromosome:IRGSP-1.0:6:20690576:20691745:-1 gene:Os06g0547100 transcript:Os06t0547100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:class III peroxidase 87 description:Similar to peroxidase 52. (Os06t0547100-00)
Sequence

MGFLFARSSGYSFVALALLACVLLAPCQAAKAGLSIKFYAKTCPGVDTIVRSVVAQAVAK
EPRMGASIIRLFFHDCFVNGCDASILLDDTLTFTGEKNAGANINSVRGYEVIDAIKSQVE
AACKGVVSCADIVALASRDAVNLLGGPTWNVQLGRKDSRTASGTAANANLPGPASSGASL
VAAFAGKGLSAREMTALSGAHTVGRARCLMFRGRIYGEANINATFAAALRQTCPQSGGGD
GNLAPFDDQTPDAFDNAYFKNLVAQRGLLHSDQELFNGGSQDALVRKYAGNAGMFAGDFA
KAMVKMGGLMPAAGTPTEVRLNCRKVN

Transcript Sequence

Transcript ID

Os06t0547100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20690576:20691745:-1 gene:Os06g0547100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:class III peroxidase 87 description:Similar to peroxidase 52. (Os06t0547100-00)
Sequence

ATGGGTTTCTTGTTTGCCAGGAGCAGCGGCTACAGCTTTGTTGCTCTTGCCCTCCTGGCG
TGCGTGCTGCTGGCGCCGTGCCAGGCGGCGAAGGCGGGGCTCTCGATCAAGTTCTACGCC
AAGACGTGCCCCGGCGTGGACACCATCGTGCGGTCGGTGGTGGCGCAGGCCGTCGCCAAG
GAGCCCCGGATGGGCGCCTCCATCATCCGCCTCTTCTTCCACGACTGCTTCGTCAACGGG
TGCGACGCGTCCATCCTCCTCGACGACACGCTGACGTTCACAGGCGAGAAGAACGCCGGC
GCCAACATCAACTCCGTGCGCGGGTACGAGGTCATCGACGCCATCAAGTCCCAGGTCGAG
GCGGCCTGCAAGGGCGTCGTCTCCTGCGCCGATATCGTCGCGCTGGCGTCTCGCGACGCC
GTAAACTTGCTCGGGGGACCGACGTGGAACGTGCAGCTGGGCAGGAAGGACTCGCGCACG
GCGAGCGGGACCGCGGCGAACGCCAACCTGCCCGGCCCGGCGTCCAGCGGGGCGTCGCTC
GTGGCAGCGTTCGCGGGGAAGGGCCTCTCGGCGCGCGAGATGACGGCGCTGTCCGGGGCG
CACACCGTGGGGCGGGCGCGCTGCCTCATGTTCCGCGGCCGCATCTACGGGGAGGCCAAC
ATCAACGCCACGTTCGCCGCCGCGCTGCGGCAGACGTGCCCGCAGTCCGGCGGCGGCGAC
GGCAACCTAGCGCCGTTCGACGACCAGACGCCCGACGCGTTCGACAACGCCTACTTCAAG
AACCTGGTGGCGCAGCGCGGCCTGCTGCACTCCGACCAGGAGCTGTTCAACGGCGGGTCG
CAGGACGCGCTGGTGAGGAAGTACGCCGGGAACGCCGGCATGTTCGCCGGCGACTTCGCC
AAGGCGATGGTGAAGATGGGCGGCCTCATGCCGGCGGCCGGGACGCCGACGGAGGTCAGG
CTGAACTGCCGGAAGGTGAACTAA