Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0546400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:20666472:20673698:1 gene:Os06g0546400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L1. (Os06t0546400-01)
Sequence

ATGGCTCACCTCCGCCTCCTCCTCTCCCACTCCAGCCGCCACCACCCCCAGCCGCACCGT
CTCATCTCGCTCCTCCGCTTCTCCTCTAACACCGGCTCCGGCTCCGGCTCCGGCCCAACG
CCGCCGCCCATCAAGCCCGTGTCCTACGCCCCGAAGCCGCAGCCAGCGCCCGAGGAGGCT
CCCGCCGCCGCGGAGGAGGCTGCCCCGAGCGATGACCCCGGGTCTCGGCCCCCGCCGCCG
CCAAGGAGATCGCAGGGGCCGCCACAGCGGCAGCAGTGGACGCGGGAGGAGATGCGGTTC
GTGAAGGACGCGGGGCCCTCGATCACGCCGGTGTCGTACCCGGCCAGGGTCGCGCCGCTG
CCGGAGGACCGTCCGGCGGAGGAGGCACCCCCGGAGGGGCCGGCGGACGAGGGGCTGCGG
GGAGAGGGGGAGCGGATCGAGATGGACGCCACGCGGGCCAGGAGGAGCTTCTTCGGGATG
CAGGCGGAGGAGGAGCAGGCGCCATACCCGACGCTCATACCCGTCGAGAAGCGGCCGCAG
AAGGTCGCCATTGATCTCGTCGACGCCATCCGCGAAATCAAGACCAGTGCAAATGAAAAG
AAGCGGAATTTTACCGAAACAGTTGAAGCTCATGTAATGTTAGGTGTTGATCCACGTCGT
GGTGACCAGGTTTGCTGCGCTATATGTATAAACTAG

Peptide Sequence

PEP ID

Os06t0546400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:20666472:20673698:1 gene:Os06g0546400 transcript:Os06t0546400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L1. (Os06t0546400-01)
Sequence

MAHLRLLLSHSSRHHPQPHRLISLLRFSSNTGSGSGSGPTPPPIKPVSYAPKPQPAPEEA
PAAAEEAAPSDDPGSRPPPPPRRSQGPPQRQQWTREEMRFVKDAGPSITPVSYPARVAPL
PEDRPAEEAPPEGPADEGLRGEGERIEMDATRARRSFFGMQAEEEQAPYPTLIPVEKRPQ
KVAIDLVDAIREIKTSANEKKRNFTETVEAHVMLGVDPRRGDQVCCAICIN

Transcript Sequence

Transcript ID

Os06t0546400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20666472:20673698:1 gene:Os06g0546400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L1. (Os06t0546400-01)
Sequence

CCCCTTCTCCCCACACCCCACTAAAACCCCAGGCCTCGCCAGCCGCCGCCGGCCGCCGCC
ACTCCCCGCCATCGCCATGGCTCACCTCCGCCTCCTCCTCTCCCACTCCAGCCGCCACCA
CCCCCAGCCGCACCGTCTCATCTCGCTCCTCCGCTTCTCCTCTAACACCGGCTCCGGCTC
CGGCTCCGGCCCAACGCCGCCGCCCATCAAGCCCGTGTCCTACGCCCCGAAGCCGCAGCC
AGCGCCCGAGGAGGCTCCCGCCGCCGCGGAGGAGGCTGCCCCGAGCGATGACCCCGGGTC
TCGGCCCCCGCCGCCGCCAAGGAGATCGCAGGGGCCGCCACAGCGGCAGCAGTGGACGCG
GGAGGAGATGCGGTTCGTGAAGGACGCGGGGCCCTCGATCACGCCGGTGTCGTACCCGGC
CAGGGTCGCGCCGCTGCCGGAGGACCGTCCGGCGGAGGAGGCACCCCCGGAGGGGCCGGC
GGACGAGGGGCTGCGGGGAGAGGGGGAGCGGATCGAGATGGACGCCACGCGGGCCAGGAG
GAGCTTCTTCGGGATGCAGGCGGAGGAGGAGCAGGCGCCATACCCGACGCTCATACCCGT
CGAGAAGCGGCCGCAGAAGGTCGCCATTGATCTCGTCGACGCCATCCGCGAAATCAAGAC
CAGTGCAAATGAAAAGAAGCGGAATTTTACCGAAACAGTTGAAGCTCATGTAATGTTAGG
TGTTGATCCACGTCGTGGTGACCAGGTTTGCTGCGCTATATGTATAAACTAGATAATTTT
GTAGTGCTAAGTTTTTATTGCTTACTTCTCTAACATGGAAGTGTAGCATTGTCATTAGTC
ATTACATTGCATTTCTGACTGCCGGCTTCATTGCTTGCTTTACTTTCAAGACAGGTTTTC
ATAGCTGGTTTAGTTTCCATGTCCTTATACTCAATCCAGCCAGCCTTTATTTCAGCTAGT
GGGTTTGTACACTGTGTTTAGAAAGCATTATGTGCTAGGCAGGTATCAGTAGGACATAGA
GACCCTAGAGGCCCCTGCACAGCTGACAGTGCAAAATCCATGTTTAAACAGAAATGTATT
AGAATACCAGAATGACAAATAGACATGCTATTTTCAGAAGAAGCAAACATCAAGAATTCA
TGTTCCTGTACATCCATTTTTCAAAGAAGCAATGTAAAGTTTGTAGAATTGTAGCTGCAC
CTTGCATAAGTATATGAAATATGCTTAGGTCCCCTTTGTTTCCGCTTAGGTTTTTAAGCT
GACTTTTCATTTTCAGCTTTTATGGTTAATAAGCCAGTAGTTTTTATGTCGCAATGTCAA
GGGTGTAGTCCAAACACTAATCCACATAAACCAAAACAAGCTACTCAAACCTGGCTTTTG
ACTTAATAAGGATGCTTATGATTTATGACTTAAAAAGCCAAAGCTGTCCATTTGTTTGGG
CTCTGGCTTATAAGCCCAAACAAAGAGGGCCTTAGACTGGCTAGTGACATTTTTTTTAGA
ACTTGCAGGAGATCTGTGTATCATTTCATTAAGATAGATAAGAAAAGGTGTACGGTGTTA
GAGAAAGACTCCGACACCCGCCCACCAGGGATACAAGAGAATAGCACACACCCAAAGGAA
AAAGAAAACCCAAACTAGTGCATTAGTAGCCCAGTCCTAGTAAAGAGATCACGGAGCCTA
GCAGCTCCTGCTAGGCGCCAAAGAGCGCTCTCATTAGCGATGGCTCGGAGGACATCGGCC
AAGCATGGGGTAGCGCCATTAAACACACATTGTTCATGTGCTTCCAAATTTCCCAAGCGA
CCAAGATGATTAAAGAGTTTAGCCCTTTCTTCTCATTAGTAGGTAAACCCCTTACCGTTC
TTGACCACCAATTGGCAAACCTAGCAGTAACCTGGGTTGGAAAGCTAGAGTAGCCAAGCC
GTTGCAGGACCAAACACCATACTTGTCGAGAAAACACACAAGTGACTAGGATGTGATTAA
TAGTTTCCTGAGCTTGATCACATAATGGACATGTAGGTGGGTGTTGAAGTCCTCGCTTGT
CTAACCGGTCTGCTGTCCAACAACGATTATTAATTGCCAACCATATATACAATTTGCATT
TCAAAGGCGCCCAACTCTTCCAAATTCTTCTCCAAGGTGCAATTGAAGTGGCAAGATGAC
GCCTAGTGCCTAGTCAGCCTCTTTGTTCGCTTTTTAGAACTATGTGTGTATCAACTCTTC
TTGTGTCCTAACCACTAGTGATGAGTTATGACAGCAAAAATGTCCTAAGAGGATATGCTG
ATTGAGATAACCTACTACTTACAGTAATGGGAATGATTTGTGTCTGTCTATGCGTTTATT
CTTGCTGTGAGGCCAGTGTTCCTCGAAAGGTGAAATCATGATGCATACAACACAAGTTAA
CAGAGATACTGCTGAAATGATATTATGGTGTTCTGTTACTTCTGTTGTACCCCATCTAGT
TGTGATTGTTAGATTAGTGGAAAGTTACTGGCAATGCACAAGAAATGGTGAACATAGATT
TTATGATGCATGATCCAATAACCAAGTCAATCAATCAATCTTATGATCTCTTTTATCTGG
TTGTGATTGTTGGATTGGTGCAAAGTTATACTGACCATATTTCTCCCTGGGTTACAGATG
GTGCGTGGCGCGTTAACTTTGCCACATGGCACTGGCAAGACTGTTAGGGTAGCGGTATTT
GCAGAAGGTCCTGCAGCAGATGAAGCTAGAGCTGCTGGAGCTGATGTCGTTGGTGGTGAC
GAGCTGATTGAGGAGATCCGCACAGGAGGCGGTAAACTGAGTTTTGACAAGTGCATTGCT
ACCCCTATGTACATGCCTCGTCTTTCGAAGGTTGCTAGAATATTGGGTCCACGCGGACTG
ATGCCAAATCCTAAGCTAGGGTCTGTGACAAACGATGTTTCTGGTGCTGTCAAAGCAGCA
AAATCAGGCCGGGTTGATTTCAAAATAGATAAAACAGCTATAGTGCATGTTGGTCTTGGG
AAGATAAATTTTTCTGATGAGAATTTGCGTGAAAATATTGGTGCTTTTGTACATGCACTT
CTACTTGCCAAGCCAGTGGGATTAAAGAAAACTTCAAAGTATGTTGGATACGTGAAGAAG
TTCACACTGAGTAGCACAATGGGTCCTGGATTTCCTGTAACCATACCATCGCTATCCGCG
GCAGCTGATCATTATAACAATAGCAAGGTGCAAGCCAGCTAACGAAATATAATCAAGTTA
AACGAACCTTTTTGCACTAGTGAACACAGCCGGCTTGCAAGTTGTGGATGGTTTGGTGAT
GAAGCATAGAGGCCGACCGCAGTTAGATGAATGGCTGTTTTTGACACTGGGTTAATGATT
GTGGACAAAAACCTTCAAGAAACATTCGGTAGGGGATTCTTAGTTTTTTTTGCTGCTCAG
CAATTATGTGACTGCGTTAAATGGCCCACCTTTGTCATCCACGGTGTTCTGCAATTTGTT
GTAAGAAATGTAATTCTGAGTTTATTCTTAAACAAGATTGTAGTTCTAGCATTTTGGAGA
TAATAATGGTCGAGATACCGCATAATGTGATCCGACAGAATATGGCACTCG