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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0542300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:20404356:20405495:-1 gene:Os06g0542300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal transport/detoxification protein domain containing protein. (Os06t0542300-01)
Sequence

ATGACGATCGTGGAGATGCAGATGAACATCGACTGCGACGGTTGCGAGGACAACGTGAGG
AAGGCACTCCAGAGGCTCCAAGGGGTGGATTACGTGGACGTGGACAGGGTGAGGGGGAAG
GTGACGGTGACGGGGTCGGCGAGCCAGAAGAAGGTGCTGCGTGCAGCGCGGCGCTCCGGG
AGGATCGCCGTGCTCTGGCCGTCGGCGTACGACACCGACCACCGCCACCACCACCAAGCC
TACTACGCGCAGCCGGCGTACCATCACCACCACCACTACCAACAAACCATCAAGCCCGCC
GCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGCGCGCGCGCCCCACCACCACCACCAACAC
TACAGCAGCGTGCAGCACGGCAGGATGAGCGGAGGAGGCAAGGCGGTGAGCTCGTACAAC
TACCACGTCCACGGATACTTCGACTCCGACCTCCACGGGTACAGCGGCGGCCACCACCAC
GGCGACGTCGTGCCGGCCGCCGCGCGGAGCTACTTCAGCGACGAGAACCCGCACGCCTGC
GCCGTCATGTGA

Peptide Sequence

PEP ID

Os06t0542300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:20404356:20405495:-1 gene:Os06g0542300 transcript:Os06t0542300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal transport/detoxification protein domain containing protein. (Os06t0542300-01)
Sequence

MTIVEMQMNIDCDGCEDNVRKALQRLQGVDYVDVDRVRGKVTVTGSASQKKVLRAARRSG
RIAVLWPSAYDTDHRHHHQAYYAQPAYHHHHHYQQTIKPAAAAAAAVAVAARAPHHHHQH
YSSVQHGRMSGGGKAVSSYNYHVHGYFDSDLHGYSGGHHHGDVVPAAARSYFSDENPHAC
AVM

Transcript Sequence

Transcript ID

Os06t0542300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20404356:20405495:-1 gene:Os06g0542300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal transport/detoxification protein domain containing protein. (Os06t0542300-01)
Sequence

AGAAAAGCACTCTTATTAGCAGAGGAGAAGCTTAACAACTCTGTCATATGTGCATATACA
GAACACTGTAGTTAGCATCTCTGTGATTAAGCGGCGTCTTCCAGGACTCAAGCAGCGCAG
CAGCTAGCCTAGCCATGACGATCGTGGAGATGCAGATGAACATCGACTGCGACGGTTGCG
AGGACAACGTGAGGAAGGCACTCCAGAGGCTCCAAGGGGTGGATTACGTGGACGTGGACA
GGGTGAGGGGGAAGGTGACGGTGACGGGGTCGGCGAGCCAGAAGAAGGTGCTGCGTGCAG
CGCGGCGCTCCGGGAGGATCGCCGTGCTCTGGCCGTCGGCGTACGACACCGACCACCGCC
ACCACCACCAAGCCTACTACGCGCAGCCGGCGTACCATCACCACCACCACTACCAACAAA
CCATCAAGCCCGCCGCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGCGCGCGCGCCCCACC
ACCACCACCAACACTACAGCAGCGTGCAGCACGGCAGGATGAGCGGAGGAGGCAAGGCGG
TGAGCTCGTACAACTACCACGTCCACGGATACTTCGACTCCGACCTCCACGGGTACAGCG
GCGGCCACCACCACGGCGACGTCGTGCCGGCCGCCGCGCGGAGCTACTTCAGCGACGAGA
ACCCGCACGCCTGCGCCGTCATGTGACCGTCGCCGTCGCCGGCCGGTCGGCCGGAAGAAC
GCTGCTCTGCTCTGCATGCTCCTCTGTGTTCTTGTGTGGCTTTGTGCAGTTGTTGTTGTT
GTGTACTTGTGTACAGTTTCAGACTTTCAGCCTTTCAGAGATCAGTCTGCGTGTTTTCAG
GAGTACCTCGCTAGTTCTAGTATTGTAGCCTGAAACTTCTAAATCCAAGAGCAAAGTTTT
GCTTTGCTTCCGGTTTGATGAATC