Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0538900-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:20223916:20224692:-1 gene:Os06g0538900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 domain containing protein. (Os06t0538900-01)
Sequence

TCGCATCATCCCTCCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCC
AACCCAACTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTC
CACACGGGGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTC
CCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGG
TTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGG
AAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGC
GTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTC
AGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCC
GTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCC
GCCGACGAGGCCGACGCCGCCGCCACCAACTGA

Peptide Sequence

PEP ID

Os06t0538900-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:20223916:20224692:-1 gene:Os06g0538900 transcript:Os06t0538900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 domain containing protein. (Os06t0538900-01)
Sequence

SHHPSPKFPNSGPPASQETPNPTPAMASQLVEEHRSGAEVHTGHELCERKARELLVELGL
PDGLLPLPSLEEVGYNRAAGFVWLRQTQAGGATHTFDTIGKQVWYAGEVTAFVEQGRMHG
VAGVKSKELLIWVSISEIVLSPSGTKLVFRTPAGLGRALPVTAFQLNPAPPEPEKKDAAA
ADEADAAATN

Transcript Sequence

Transcript ID

Os06t0538900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20223916:20224692:-1 gene:Os06g0538900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 domain containing protein. (Os06t0538900-01)
Sequence

TCGCATCATCCCTCCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCC
AACCCAACTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTC
CACACGGGGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTC
CCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGG
TTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGG
AAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGC
GTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTC
AGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCC
GTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCC
GCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTT
AGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTG
TTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTC
TCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCT