Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0535300-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:20035104:20042684:-1 gene:Os06g0535300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein C55 description:Similar to AFL190Cp. (Os06t0535300-01);Hypothetical conserved gene. (Os06t0535300-02)
Sequence	ATGGATTGCAACAAAGATGAGGCTGTTAAGGCAAAAGCTTTGGCTGAAAAAAAAATGCGG GAGAAGGATTTCGCTGGTGCAAAAAGGATGATTAACAAGGCACAAAATCTCTCCAAAGAT GTTGACAGCAACATTTCACAAATGTTAACTGTTTGTGATATTCATTGTGCTTCTGCAACG AAGGTTAATGGAGAGATTGATTGGTATGGTATACTTCAAGTACCTGTCACAGCTGATGAC ACACTAATAAAGAAACAATATCGTAAGCTTGCTCTTTTGCTACATCCAGACAAGAACAAT TTTGCAGGTGCAGAGGCAGCATTTAAATTAGTGGGAGAAGCAAACATGACGCTTACAGAC CGCTCAAAACGTTCTGTCTATGACATGAAAAGAAATGCCTCAGTCAGAATTGGTTCTGCA AGAGTTCCTTATCAGCAATCAAGGAGAACTGCACCTGTTAGACCTACCACTACACCTGTG AATCTCCATAATGTGCATCAATCACAACAGCATAAGCCCTCAAATCCTTCAGACTCACAA ACATTTTGGACCATATGCCCAACTTGTGGCATGCGATATCAATACTACCTTTCAATATTG AAGAAAGCTCTCCGTTGTCAGAATTGCTTGAAGCCCTTTGTTGCACTTGATTTAAACGAG CAAGCTGTTCCTTCTGGGGCAAATCAGAGGTCTGCTGGGGTGTGGAAAAGTTCAGGAGCA CCACAAAACTTTCCAGGTTCACAAGCAAATGTAGGACAGCAAGCTCAGAATTCTGCCAAT CCAGTCCATGCTAATTTTGGTTCTCATAATGCACATGTAGAAACAAAGAGGGGAGCTGAT GGAAACGAGGCTGGTGGGCTAAAGAACAAAAGAAAATTTGCTAAGGCAACAGGGAATTCT TCAAAAGCTTCTTCAGTTGCTGGATCAAAAAAGCGCAGAAAAGCTATGTTTGAATCTAGT GAATCTAGCGCTTCAGACACCAGCACTGATAGCGAAGAAGAGATTATTGAAGATGGTCCT GCTGCAAGTAATGTAGGGCCAGATCAACATCCCCGCAGATCAAGCAGGCAGAAGCAAGAA GTTAAGTATAATGAAGATAGCGATGGTGACGACACTGACTGTCACGGCAATGGTGATGAT GGTTTTGTGAGTTCTCCCAGTTTGAAAAGGTTAAGGAAAGGCGGTCTGTTTCATGGTGGT GAAAACAATGAAACTAAGTTGAATGCTGACACAACTGGGCCTGGGCATGATGGTCCAACT AATGGTGTTAATAATTACAATAATACAGAAGACATAGAGAGAGGCTCTGCTTGTGCTGAG CAAATCAAGAGGGAAACAATGTCTGGTGGAGGAAATAGTGCTGAGAAAGAAAAATTATCC CATTCTGTCAGCAACAATGGTCTAGAGTCAAACTCTGATGATGCTCCAAATGAGGTTATT TGTGCGGATTCAGAATTTTTTGACTTCAATCAACTTCGACATATAAATCAGTTTAAAGCC AACCAGATATGGGCTTGCTATGATAGTCAAAGCTGTATGCCAAGATACTATGCTCGAATT ACAAAAGTAAAACATGTCCCGAAGTTTATGTTAAATTTCATTTGGCTGGAGTTTGATCCC AAAAATAAAGCAGAGGCTGCTTGGTCTTCTGGGGACCTACCAGTGTCTTGTGGACGTTTT AAGCATGGAGTGTCAGATACAGCAAAAGAGAGCAGTATGTTCTCTCATGCCATTTTCTAT GAAAAAAACAAGACAAGAAACTCTTATGAAATATATCCTAGGAAAGGCGAAGTATGGGCT CTTTTCAAGGGTTGGGATATTGATTGGAGTGCAGATGCTGACAAACACAAAAACTATGAG TATGAAGTTGTTCAAGTCCTCTCTGATCTCACTAGTAGCACTAGCATCATTGTCATGCCA CTTGTAAAGATAAAAGGCTTTGTTAGCTTGTTTATTCAGTCTAAAGAGGCATCCCCATAT GTGATACCTCAGGATGACACACTAAGGTTTTCACATTGTGTCCCTCGTCATACGATGATT GGAACCGAAAAAGAAGGGATTCCAGAAGGGGCTATTGAACTTGATCCTGCGGCGCTTCCT CTGAACTTTGGAGTGGCTTTTGCTTCTGTTGTTCCAGAAAGCTGCTGTTCAGTGAAAGTG CAGGGTTCTGGTGCTGAACACATAGGTTCATCCAGTGGAAATAACTGTCACAAGGGATCG GTGGATGTTGGGGAGAGCCAACATGCTACATGCGCAAATACAGGGTTCGCTACAAGGACA ACAAAGGCAGAGATCAATGAGCACAACGCTCGATCTGCAGTAGAAGGTACAGATGATGAC GAGGAACCTGATGATTTTGCCCAAGCAGAAGTACTATATCCTGAATCAGAATTCTTTGAA TTTTCAGAAATAAGATCGATCCACAAATTTCAACCTGGGCAGATCTGGGCTCTCTATAGT GATGTAGATAAGTTCCCCAATTACTATGCCTGCATAAAAACTGTTGATGTCAAGAATAAT GAACTGCAAGTAAGATGGCTTGATGCTTGCCCACAGAGTGAAGAGGAGAGAAGATTGGTA AGAGAAGATCTAACAGTTGCGTGCGGAACCTTTAAGATTTCCAGTTTCCATGGTATTCAA ACTTACAATGGTACAGAGTACTTGTCTCATCCTGTACAGGCCAAACCTGGTAGAAGAAAT GAATATGAAATAGTTCCTTGCCAAGGTGATATTTGGGCTGTTTTCAAGAACTGGAGGACT GGATGGACCGCAAAAGATTATAAGAAATGTGACTATGAATTGGTGGAGATATTTGGCCAC ACTGATTCATCCATACAAGTTCAGCTTTTAAGAAAGGTGGATGGTTATAGGGCAGTATTT ATGCCAGACAGAAGAGAGGGAGCTGTGAAGACAATAAGGAAAGATGAGTACCCAAAGTTC TCTCACCAGATTCCTTGCTTCCATCTGACAAATGAAAGAGGAGGCAAGCTTCGAGGTTTT TTGGAGCTCGATCCTTTGTCAGTGCCAGAGATGTTTCTTTTCACCGAATCAATCTGA

Peptide Sequence

PEP ID	Os06t0535300-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:20035104:20042684:-1 gene:Os06g0535300 transcript:Os06t0535300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein C55 description:Similar to AFL190Cp. (Os06t0535300-01);Hypothetical conserved gene. (Os06t0535300-02)
Sequence	MDCNKDEAVKAKALAEKKMREKDFAGAKRMINKAQNLSKDVDSNISQMLTVCDIHCASAT KVNGEIDWYGILQVPVTADDTLIKKQYRKLALLLHPDKNNFAGAEAAFKLVGEANMTLTD RSKRSVYDMKRNASVRIGSARVPYQQSRRTAPVRPTTTPVNLHNVHQSQQHKPSNPSDSQ TFWTICPTCGMRYQYYLSILKKALRCQNCLKPFVALDLNEQAVPSGANQRSAGVWKSSGA PQNFPGSQANVGQQAQNSANPVHANFGSHNAHVETKRGADGNEAGGLKNKRKFAKATGNS SKASSVAGSKKRRKAMFESSESSASDTSTDSEEEIIEDGPAASNVGPDQHPRRSSRQKQE VKYNEDSDGDDTDCHGNGDDGFVSSPSLKRLRKGGLFHGGENNETKLNADTTGPGHDGPT NGVNNYNNTEDIERGSACAEQIKRETMSGGGNSAEKEKLSHSVSNNGLESNSDDAPNEVI CADSEFFDFNQLRHINQFKANQIWACYDSQSCMPRYYARITKVKHVPKFMLNFIWLEFDP KNKAEAAWSSGDLPVSCGRFKHGVSDTAKESSMFSHAIFYEKNKTRNSYEIYPRKGEVWA LFKGWDIDWSADADKHKNYEYEVVQVLSDLTSSTSIIVMPLVKIKGFVSLFIQSKEASPY VIPQDDTLRFSHCVPRHTMIGTEKEGIPEGAIELDPAALPLNFGVAFASVVPESCCSVKV QGSGAEHIGSSSGNNCHKGSVDVGESQHATCANTGFATRTTKAEINEHNARSAVEGTDDD EEPDDFAQAEVLYPESEFFEFSEIRSIHKFQPGQIWALYSDVDKFPNYYACIKTVDVKNN ELQVRWLDACPQSEEERRLVREDLTVACGTFKISSFHGIQTYNGTEYLSHPVQAKPGRRN EYEIVPCQGDIWAVFKNWRTGWTAKDYKKCDYELVEIFGHTDSSIQVQLLRKVDGYRAVF MPDRREGAVKTIRKDEYPKFSHQIPCFHLTNERGGKLRGFLELDPLSVPEMFLFTESI

Transcript Sequence

Transcript ID	Os06t0535300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:20035104:20042684:-1 gene:Os06g0535300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein C55 description:Similar to AFL190Cp. (Os06t0535300-01);Hypothetical conserved gene. (Os06t0535300-02)
Sequence	GTCTTCTCCTGCGCGAGAGACTCGAGGACTCCCCTCCCCCCCCTCTCCAAACCCTCGCCT CGGCTCCCCCGCAGCCGCGCACGCCACCGCCGTCGCCTCTCCTCTCCACCGCCTCCCCAC CCACCCGCTAGGTTTCCGCCGCTGCCCGGGGTTCTCGCCGCCGCGCCGCCCTCCCCCACG CTCGCTCTCCGGGTGGGGGTGGTGCCGCCCCTCTCCTCCTCCGTTTCCAGGCGGGTGCCG GCCGGGGGGGTCTCTCGCCCTCGTCTCCTCTCCCCCTGGTCGTCGGCACCGGCGGCTGGG AACTCGCCGACGCGTCGTTTCCCCGCGAGGCCGCCGCCTAGATCTGGAGGAGGGGGTTTG GGGGTAAAATACTGTTTGTTAGACAACAAGATTGAGATTCTCAAACCTGTTGGCTGGTGC TATATCATTTGCATTTGGTTGAACTCGAAACCAAAAGGTGCAATACTGTTGGCCACATAA CACTATTCAGATTCTCAAACCTTTTGGCTGATGCTGTATCATTTGCATTTAATTAAAGTT GAAACCAAAGGCTGGCAACTTGTTAAAATTGGTGTACCATTTGTTATTTGAAGCCATAGC ATATCTCAGCTCCTGAACAATAAGGTGCTGTATTCAGCACAGTTTAAGTGTGAAAAAGAA TGGATAGAAAAATCACACTTTGTTGCCACTGGTATGCTTTTGAAAGAAATTAGGGGTTTG GATCTCTATCTATTCTAGTTACAATGGATTGCAACAAAGATGAGGCTGTTAAGGCAAAAG CTTTGGCTGAAAAAAAAATGCGGGAGAAGGATTTCGCTGGTGCAAAAAGGATGATTAACA AGGCACAAAATCTCTCCAAAGATGTTGACAGCAACATTTCACAAATGTTAACTGTTTGTG ATATTCATTGTGCTTCTGCAACGAAGGTTAATGGAGAGATTGATTGGTATGGTATACTTC AAGTACCTGTCACAGCTGATGACACACTAATAAAGAAACAATATCGTAAGCTTGCTCTTT TGCTACATCCAGACAAGAACAATTTTGCAGGTGCAGAGGCAGCATTTAAATTAGTGGGAG AAGCAAACATGACGCTTACAGACCGCTCAAAACGTTCTGTCTATGACATGAAAAGAAATG CCTCAGTCAGAATTGGTTCTGCAAGAGTTCCTTATCAGCAATCAAGGAGAACTGCACCTG TTAGACCTACCACTACACCTGTGAATCTCCATAATGTGCATCAATCACAACAGCATAAGC CCTCAAATCCTTCAGACTCACAAACATTTTGGACCATATGCCCAACTTGTGGCATGCGAT ATCAATACTACCTTTCAATATTGAAGAAAGCTCTCCGTTGTCAGAATTGCTTGAAGCCCT TTGTTGCACTTGATTTAAACGAGCAAGCTGTTCCTTCTGGGGCAAATCAGAGGTCTGCTG GGGTGTGGAAAAGTTCAGGAGCACCACAAAACTTTCCAGGTTCACAAGCAAATGTAGGAC AGCAAGCTCAGAATTCTGCCAATCCAGTCCATGCTAATTTTGGTTCTCATAATGCACATG TAGAAACAAAGAGGGGAGCTGATGGAAACGAGGCTGGTGGGCTAAAGAACAAAAGAAAAT TTGCTAAGGCAACAGGGAATTCTTCAAAAGCTTCTTCAGTTGCTGGATCAAAAAAGCGCA GAAAAGCTATGTTTGAATCTAGTGAATCTAGCGCTTCAGACACCAGCACTGATAGCGAAG AAGAGATTATTGAAGATGGTCCTGCTGCAAGTAATGTAGGGCCAGATCAACATCCCCGCA GATCAAGCAGGCAGAAGCAAGAAGTTAAGTATAATGAAGATAGCGATGGTGACGACACTG ACTGTCACGGCAATGGTGATGATGGTTTTGTGAGTTCTCCCAGTTTGAAAAGGTTAAGGA AAGGCGGTCTGTTTCATGGTGGTGAAAACAATGAAACTAAGTTGAATGCTGACACAACTG GGCCTGGGCATGATGGTCCAACTAATGGTGTTAATAATTACAATAATACAGAAGACATAG AGAGAGGCTCTGCTTGTGCTGAGCAAATCAAGAGGGAAACAATGTCTGGTGGAGGAAATA GTGCTGAGAAAGAAAAATTATCCCATTCTGTCAGCAACAATGGTCTAGAGTCAAACTCTG ATGATGCTCCAAATGAGGTTATTTGTGCGGATTCAGAATTTTTTGACTTCAATCAACTTC GACATATAAATCAGTTTAAAGCCAACCAGATATGGGCTTGCTATGATAGTCAAAGCTGTA TGCCAAGATACTATGCTCGAATTACAAAAGTAAAACATGTCCCGAAGTTTATGTTAAATT TCATTTGGCTGGAGTTTGATCCCAAAAATAAAGCAGAGGCTGCTTGGTCTTCTGGGGACC TACCAGTGTCTTGTGGACGTTTTAAGCATGGAGTGTCAGATACAGCAAAAGAGAGCAGTA TGTTCTCTCATGCCATTTTCTATGAAAAAAACAAGACAAGAAACTCTTATGAAATATATC CTAGGAAAGGCGAAGTATGGGCTCTTTTCAAGGGTTGGGATATTGATTGGAGTGCAGATG CTGACAAACACAAAAACTATGAGTATGAAGTTGTTCAAGTCCTCTCTGATCTCACTAGTA GCACTAGCATCATTGTCATGCCACTTGTAAAGATAAAAGGCTTTGTTAGCTTGTTTATTC AGTCTAAAGAGGCATCCCCATATGTGATACCTCAGGATGACACACTAAGGTTTTCACATT GTGTCCCTCGTCATACGATGATTGGAACCGAAAAAGAAGGGATTCCAGAAGGGGCTATTG AACTTGATCCTGCGGCGCTTCCTCTGAACTTTGGAGTGGCTTTTGCTTCTGTTGTTCCAG AAAGCTGCTGTTCAGTGAAAGTGCAGGGTTCTGGTGCTGAACACATAGGTTCATCCAGTG GAAATAACTGTCACAAGGGATCGGTGGATGTTGGGGAGAGCCAACATGCTACATGCGCAA ATACAGGGTTCGCTACAAGGACAACAAAGGCAGAGATCAATGAGCACAACGCTCGATCTG CAGTAGAAGGTACAGATGATGACGAGGAACCTGATGATTTTGCCCAAGCAGAAGTACTAT ATCCTGAATCAGAATTCTTTGAATTTTCAGAAATAAGATCGATCCACAAATTTCAACCTG GGCAGATCTGGGCTCTCTATAGTGATGTAGATAAGTTCCCCAATTACTATGCCTGCATAA AAACTGTTGATGTCAAGAATAATGAACTGCAAGTAAGATGGCTTGATGCTTGCCCACAGA GTGAAGAGGAGAGAAGATTGGTAAGAGAAGATCTAACAGTTGCGTGCGGAACCTTTAAGA TTTCCAGTTTCCATGGTATTCAAACTTACAATGGTACAGAGTACTTGTCTCATCCTGTAC AGGCCAAACCTGGTAGAAGAAATGAATATGAAATAGTTCCTTGCCAAGGTGATATTTGGG CTGTTTTCAAGAACTGGAGGACTGGATGGACCGCAAAAGATTATAAGAAATGTGACTATG AATTGGTGGAGATATTTGGCCACACTGATTCATCCATACAAGTTCAGCTTTTAAGAAAGG TGGATGGTTATAGGGCAGTATTTATGCCAGACAGAAGAGAGGGAGCTGTGAAGACAATAA GGAAAGATGAGTACCCAAAGTTCTCTCACCAGATTCCTTGCTTCCATCTGACAAATGAAA GAGGAGGCAAGCTTCGAGGTTTTTTGGAGCTCGATCCTTTGTCAGTGCCAGAGATGTTTC TTTTCACCGAATCAATCTGAGATAAGCCTTATCCCAAGTTAATCTGCTAGAGCATTTCTT GTGATGCTACCGGAACTAAAGGTTTTCCAGAAGTTGGGTAGTCCACAATTCAATATTTTG CTTAGTGACAGAAGCTGCTGGATTTTCAGAATTTGTATGTAGCAGTAATGTTATGGGCCG CAGCTTTTGCCTATTCTCCAATCCTCACTATGAAGGCGTTGTCAGGCAATCGGGACCGTT TTGCAAGATTAGCTGCAGTCTGAACTGATTAATTTTCCTGCAGCTGCTTTACCTAGTTAC CGATAGTTGTATCTAGTTCTCTAGCTGGACTATCAATCGTCCTTTCTCTTGTCGTACTTT GCATTGTTGGACCATGTAAAATTGAACTGTGCGAGGCCAGTCTGATTAATTCGGAAATCT CTGTTGGCCTCCCTTTCCTGGAACTTAATGAATTGAGTCCAACTTCTGTTTAGGTTGCCA ATTGA