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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0535200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:20033286:20034343:-1 gene:Os06g0535200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0535200-01)
Sequence

ATGTCGCCGTTGCTCAGTGACAAGTGTCGTCGCGCACGCGCAGCGATGTCGTCGTCGCCG
GCGCCGGTGGAGTCCCCGTGGCTGACGATGCGCGCCATGCGGCGCGTTGGCGGCGCGGAC
GGCGGCGGCGGGCAGCGGAGCGCGCTGATGGTGGCGTCGTACCCGGTGCTGCTGCTGCTC
GTCGTCCTCGCCGCGTTCGTCAAGTACGTGTGGATCGCGCTGGCGCTCTACAGCGCGCTC
CTGCTGCTGTTCTCGTGCGCGTCGCGCCGCCTGGCGCTGGCGGAGCGGCTGCCGTCGCCG
CTGGGAGGAGGCGGAGGAGGAGGAGGAGTCGCCGCGGTCACCGCGGCGGAGGAGCTCCAG
GGCGCGGCGGCGCGGGGCGGGGTGTCCGGGGAGACGCTGGCGTCCATCCCGGCGTTCGCG
TACGACGCGTCCGCGCACGGCGGCGGCGGCGAGGCGGCGGCGCAGTGCGCGGTGTGCCTG
GAGGCGCTGCGCGGCGGCGAGACGGCGCGCCGGCTGCCGTCGTGCGCGCACACGTTCCAC
GTCGCGTGCATCGACATGTGGCTGGGCTCGCACGCCACCTGTCCCGTCTGCCGGCGCCGC
GTCGAGCGCAAGCACAAGGGCGGCGTGCTGCCGCCGATGCCGCCGGAGCCGGAGACGGAG
CCGCCGGTGTAG

Peptide Sequence

PEP ID

Os06t0535200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:20033286:20034343:-1 gene:Os06g0535200 transcript:Os06t0535200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0535200-01)
Sequence

MSPLLSDKCRRARAAMSSSPAPVESPWLTMRAMRRVGGADGGGGQRSALMVASYPVLLLL
VVLAAFVKYVWIALALYSALLLLFSCASRRLALAERLPSPLGGGGGGGGVAAVTAAEELQ
GAAARGGVSGETLASIPAFAYDASAHGGGGEAAAQCAVCLEALRGGETARRLPSCAHTFH
VACIDMWLGSHATCPVCRRRVERKHKGGVLPPMPPEPETEPPV

Transcript Sequence

Transcript ID

Os06t0535200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20033286:20034343:-1 gene:Os06g0535200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0535200-01)
Sequence

ATTGAACCTAATCGCCATGGAGGCATTATCTTAATCATGAGGATTACAAAGAAAATGTAT
ATACCATTAGCGAACCTGGCGCGTCCACGAAAGCTACCTGCATCCAACCTGCCTTAGTTG
CAGCTTGCCTCTGCTCTCTGCTCTAGCTGCTATCCGTTTCTGTCTCGGACAGGACGAGCT
TAAAGCTGCGTCGCCCATGTCGCCGTTGCTCAGTGACAAGTGTCGTCGCGCACGCGCAGC
GATGTCGTCGTCGCCGGCGCCGGTGGAGTCCCCGTGGCTGACGATGCGCGCCATGCGGCG
CGTTGGCGGCGCGGACGGCGGCGGCGGGCAGCGGAGCGCGCTGATGGTGGCGTCGTACCC
GGTGCTGCTGCTGCTCGTCGTCCTCGCCGCGTTCGTCAAGTACGTGTGGATCGCGCTGGC
GCTCTACAGCGCGCTCCTGCTGCTGTTCTCGTGCGCGTCGCGCCGCCTGGCGCTGGCGGA
GCGGCTGCCGTCGCCGCTGGGAGGAGGCGGAGGAGGAGGAGGAGTCGCCGCGGTCACCGC
GGCGGAGGAGCTCCAGGGCGCGGCGGCGCGGGGCGGGGTGTCCGGGGAGACGCTGGCGTC
CATCCCGGCGTTCGCGTACGACGCGTCCGCGCACGGCGGCGGCGGCGAGGCGGCGGCGCA
GTGCGCGGTGTGCCTGGAGGCGCTGCGCGGCGGCGAGACGGCGCGCCGGCTGCCGTCGTG
CGCGCACACGTTCCACGTCGCGTGCATCGACATGTGGCTGGGCTCGCACGCCACCTGTCC
CGTCTGCCGGCGCCGCGTCGAGCGCAAGCACAAGGGCGGCGTGCTGCCGCCGATGCCGCC
GGAGCCGGAGACGGAGCCGCCGGTGTAGCTCGTCGTACTTCCTGTGTCTTCCTCCTAGTG
ATGCAGAAGATTGCAGAATGGCAGACAAAATTTGTCAAATTTGTACTACATGTTTAGATT
AGAGGTACAATAGGCCAGTTTTTCTTGCCACTCTGCTTATTCTGCTGTTTGTAGATGCTA
ACGCGACTCATCTTTGTGAAATCTGAAGCCTGTCGCAT