Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0535100-00
CDS Infomation

cds chromosome:IRGSP-1.0:6:20025960:20031157:1 gene:Os06g0535100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 51 description:Similar to predicted protein. (Os06t0535100-00)
Sequence

ATGCACCCGATCAAACTCTGTGCCCGCTCGCCCCGGCCGTCGTCCAAGAAGCGGAAGCGC
CCCGCCGCCGCCGCCGCTACTCCGCCGGAATCTGAACCGGAGCCGGTACACAACACCGCC
GCCTGCAATTCGGAGGGAGAGAACAACGCGACGGGGAAGAGGAGGGAGCACAACAACAAG
AAGATGAAGGAGGAGAAGAGCAAGAGGAAGAAGAAGCAGGGGGAGGGGAAGAAGGGATCA
GGGATTCTGACGGACAAGCTCTTCTCGGATCTCCCCATCTCCGACCTCACCGCCAATGCC
ATCAGAGACATGAACTACACCCACCTCACCGAGATTCAGGCTAGATCGATACCGCCTCTG
ATGTTGGGAAGCGATGTGATGGCGTCAGCCAAGACCGGCTCAGGGAAGACGCTTGCGTTC
CTCATCCCGGCGATCGAGCTGCTCTGCAGGCTGCGCTTCTCGCCGAGGAACGGGACCGGA
GTTATCGTGCTTTGCCCAACAAGGGAGCTCGCTATCCAGACACACAATGTTGCCAAGGAA
TTAATGAGGTATCATTCACAAACTCTTGGATATGTAATTGGTGGTATTGACTTGAGGGGC
GAGGCTGAGCAGCTCGCGAAAGGGATCAATGTATTAGTTGCAACGCCAGGAAGGCTTCTG
GACCATATGCAAAAAACCAAAAGTTTCAAATATGAATGCCTAAAGTGCCTTATAATTGAT
GAAGCTGATCGTATACTTGAGCAAAATTTTGAGGAACAAATGAAACAAATATTTAAACTC
CTTCCTCGGCAGGGTAGGCAGACTGTTCTTTTTTCTGCTACACAGACTGAAAAGGTTGAA
GATTTTGCGAAGTTAACATTTGGGAGCAAAGAAGAAAGGCAGCGAACACTTGTTTATGTT
GGAGTTGATGATCATGAATCAAAGGCTACTGTTGAAGGATTGAAGCAGGGCTATTGTGTC
ATTCCTAGTGAGAGAAGGTTTCTGGTTCTGTATGCTTTCCTAAAAAAGGCACTTTCTGAG
AAGACGAAGGTCATGGTGTTCTTTTCATCATGTAATTCAGTCAAATTCCATGCACAACTT
CTGAATTTCATCCAGATAGAGTGTTATGATATCCATGGGCAACTAAAGCAGCATCAACGA
ACTAGTACATTTTTTAAGTTTCACAAGGCAGAACATGGCATCTTATTATGCACTAATGTG
GCAGCACGAGGACTTGATATTCCTGATGTGGACTATATTGTGCAATATGATCCTCCAGAT
GAAACAAAGGATTACATTCACAGAGTTGGTCGTACTGCCCGTGGCGATAATGGCAAAGGA
AGTGCAATACTGTTCTTACTACCGAAAGAATTACAGTTGCTCATTCACCTGAAAGCAGCT
AATATTTCTGTATCTGAATATGTGTTCAGACAAGAGCTTGTGCCAAAATTGCAACCTTAC
CTTGAGAAAATTGTTGGTGGGAATTACATCCTAAACAGATCGGCGAAAGAAGCCTACAAA
TCCTATCTTTTGGCATACAAATCACACTCTATGAAAGACATTTTTGCTATCCATCAACTT
GATTTGACGAGCGTAGCGGCTTCGTTCTGTTTTAGTGAGCCTCCAAAGGTGAATCTGGAC
CTGGAGAGCAGTGCGTCAAAACATCGAAAGAAGAGGAATGTAAACACTGGCAGGAGGCAT
GGTATCGGCCCTTCAAACCCATACGGAAGGAAAGGCAGTGATGATCGTAGGCAGTTTGCA
AGATTCTAG

Peptide Sequence

PEP ID

Os06t0535100-00
PEP Infomation

pep chromosome:IRGSP-1.0:6:20025960:20031157:1 gene:Os06g0535100 transcript:Os06t0535100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 51 description:Similar to predicted protein. (Os06t0535100-00)
Sequence

MHPIKLCARSPRPSSKKRKRPAAAAATPPESEPEPVHNTAACNSEGENNATGKRREHNNK
KMKEEKSKRKKKQGEGKKGSGILTDKLFSDLPISDLTANAIRDMNYTHLTEIQARSIPPL
MLGSDVMASAKTGSGKTLAFLIPAIELLCRLRFSPRNGTGVIVLCPTRELAIQTHNVAKE
LMRYHSQTLGYVIGGIDLRGEAEQLAKGINVLVATPGRLLDHMQKTKSFKYECLKCLIID
EADRILEQNFEEQMKQIFKLLPRQGRQTVLFSATQTEKVEDFAKLTFGSKEERQRTLVYV
GVDDHESKATVEGLKQGYCVIPSERRFLVLYAFLKKALSEKTKVMVFFSSCNSVKFHAQL
LNFIQIECYDIHGQLKQHQRTSTFFKFHKAEHGILLCTNVAARGLDIPDVDYIVQYDPPD
ETKDYIHRVGRTARGDNGKGSAILFLLPKELQLLIHLKAANISVSEYVFRQELVPKLQPY
LEKIVGGNYILNRSAKEAYKSYLLAYKSHSMKDIFAIHQLDLTSVAASFCFSEPPKVNLD
LESSASKHRKKRNVNTGRRHGIGPSNPYGRKGSDDRRQFARF

Transcript Sequence

Transcript ID

Os06t0535100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:20025960:20031157:1 gene:Os06g0535100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 51 description:Similar to predicted protein. (Os06t0535100-00)
Sequence

CCTCCCGACGCAATGCACCCGATCAAACTCTGTGCCCGCTCGCCCCGGCCGTCGTCCAAG
AAGCGGAAGCGCCCCGCCGCCGCCGCCGCTACTCCGCCGGAATCTGAACCGGAGCCGGTA
CACAACACCGCCGCCTGCAATTCGGAGGGAGAGAACAACGCGACGGGGAAGAGGAGGGAG
CACAACAACAAGAAGATGAAGGAGGAGAAGAGCAAGAGGAAGAAGAAGCAGGGGGAGGGG
AAGAAGGGATCAGGGATTCTGACGGACAAGCTCTTCTCGGATCTCCCCATCTCCGACCTC
ACCGCCAATGCCATCAGAGACATGAACTACACCCACCTCACCGAGATTCAGGCTAGATCG
ATACCGCCTCTGATGTTGGGAAGCGATGTGATGGCGTCAGCCAAGACCGGCTCAGGGAAG
ACGCTTGCGTTCCTCATCCCGGCGATCGAGCTGCTCTGCAGGCTGCGCTTCTCGCCGAGG
AACGGGACCGGAGTTATCGTGCTTTGCCCAACAAGGGAGCTCGCTATCCAGACACACAAT
GTTGCCAAGGAATTAATGAGGTATCATTCACAAACTCTTGGATATGTAATTGGTGGTATT
GACTTGAGGGGCGAGGCTGAGCAGCTCGCGAAAGGGATCAATGTATTAGTTGCAACGCCA
GGAAGGCTTCTGGACCATATGCAAAAAACCAAAAGTTTCAAATATGAATGCCTAAAGTGC
CTTATAATTGATGAAGCTGATCGTATACTTGAGCAAAATTTTGAGGAACAAATGAAACAA
ATATTTAAACTCCTTCCTCGGCAGGGTAGGCAGACTGTTCTTTTTTCTGCTACACAGACT
GAAAAGGTTGAAGATTTTGCGAAGTTAACATTTGGGAGCAAAGAAGAAAGGCAGCGAACA
CTTGTTTATGTTGGAGTTGATGATCATGAATCAAAGGCTACTGTTGAAGGATTGAAGCAG
GGCTATTGTGTCATTCCTAGTGAGAGAAGGTTTCTGGTTCTGTATGCTTTCCTAAAAAAG
GCACTTTCTGAGAAGACGAAGGTCATGGTGTTCTTTTCATCATGTAATTCAGTCAAATTC
CATGCACAACTTCTGAATTTCATCCAGATAGAGTGTTATGATATCCATGGGCAACTAAAG
CAGCATCAACGAACTAGTACATTTTTTAAGTTTCACAAGGCAGAACATGGCATCTTATTA
TGCACTAATGTGGCAGCACGAGGACTTGATATTCCTGATGTGGACTATATTGTGCAATAT
GATCCTCCAGATGAAACAAAGGATTACATTCACAGAGTTGGTCGTACTGCCCGTGGCGAT
AATGGCAAAGGAAGTGCAATACTGTTCTTACTACCGAAAGAATTACAGTTGCTCATTCAC
CTGAAAGCAGCTAATATTTCTGTATCTGAATATGTGTTCAGACAAGAGCTTGTGCCAAAA
TTGCAACCTTACCTTGAGAAAATTGTTGGTGGGAATTACATCCTAAACAGATCGGCGAAA
GAAGCCTACAAATCCTATCTTTTGGCATACAAATCACACTCTATGAAAGACATTTTTGCT
ATCCATCAACTTGATTTGACGAGCGTAGCGGCTTCGTTCTGTTTTAGTGAGCCTCCAAAG
GTGAATCTGGACCTGGAGAGCAGTGCGTCAAAACATCGAAAGAAGAGGAATGTAAACACT
GGCAGGAGGCATGGTATCGGCCCTTCAAACCCATACGGAAGGAAAGGCAGTGATGATCGT
AGGCAGTTTGCAAGATTCTAGAG