Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0529800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:19663227:19669542:1 gene:Os06g0529800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, PHD-type domain containing protein. (Os06t0529800-01)
Sequence

ATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAG
CCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGAT
TTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGC
CAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCC
TGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTT
CGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAA
GATCCAGAGAATCCAGTGAATTCTTATAACCATAACTTCAAAGGGTCCTATTGCACATGT
GGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATT
TGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGA
GATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGC
TATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCA
CAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAGCCTTGGTGACATAGAG
AAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAG
AATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGC
AAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAG
ATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACC
GACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAG
TATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAA
GCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAAT
GACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACA
TCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCA
TGA

Peptide Sequence

PEP ID

Os06t0529800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:19663227:19669542:1 gene:Os06g0529800 transcript:Os06t0529800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, PHD-type domain containing protein. (Os06t0529800-01)
Sequence

MAGEGSGGEGGAGAFEDEAEPTVTIGEYIEGIEAEELEADLVLGGDDGKECTYGGGYLKR
QAVFSCLTCVPAGVAGVCTACSLACHDGHEVVELWTKRKFRCDCGNSKFGSHVCKLCPEK
DPENPVNSYNHNFKGSYCTCGRPYPDPEAEKQVEMIQCCICEDWFHEDHIGLNSIEEIPR
DEEGEPLYEDFICPKCSPKCYFLKLYPDTIWASNKQSSAPQAETTNSTVMNGNSSLGDIE
KSENGALINHLNCEKTSDNENCPKDSVAPEKASLDDSSDGKCKLGMNICSNTPSADSEKK
MPFFMSKSWREVICRCETCTDFYAQQGVAYLIDKEDSIEEYEKVAKQKREKKLEQQEGVE
ANFLNSLDHVQKIEILSGINDMKNELQSFLETFDSSKPVTSEDIRAVFENLAKKKKQRLS

Transcript Sequence

Transcript ID

Os06t0529800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:19663227:19669542:1 gene:Os06g0529800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, PHD-type domain containing protein. (Os06t0529800-01)
Sequence

ACCCCCCCACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCC
TCGTCACTTCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCG
CTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGC
CTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGC
CGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGG
CGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGT
CGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACT
ATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTG
CAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAACTTCAA
AGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGA
AATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTC
CATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCC
CAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAA
TAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTC
AAGCCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGA
AAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCT
GGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATC
AGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTG
TAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAA
GGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGA
GCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGA
GATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGA
TTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAA
GAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATAT
CCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCT
ATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAG
AGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAAC
AAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATT