Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0528600-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:19614314:19619657:1 gene:Os06g0528600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPERMIDINE SYNTHASE 2 description:Aminopropyl transferase. (Os06t0528600-01)
Sequence

ATGGAGGGTGGAGGCGCAAAAGATGGTTCTGCAGCGGCAGCGCAAACAAGGGGGAGTGGG
GATGATGGTTCCCACAAGCCGCTGCCGCCTTGCTGTCTCAAGGCGAAGGCTGCGGCAGCA
GAGTCTGAGGCAAAATGCCATGCCACAGTGGTGTCAGGGTGGTTCACGGAACCCCGCTCG
CACTCTGGTAAAACAAGCAAAGTGCAGTACTTCAACAATCCAATGTGGCCTGGAGAAGCT
CATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAATCACCATACCAAGAAATCTTA
GTTTTTGAGTCCTCAACCTATGGGAATGTTCTGGTGCTTGATGGTATTGTGCAGCTGACC
GAAAAGGATGAATGTGCATACCAGGAAATGGTTACTCACCTTCCACTGTGCTCGATTCCA
TCCCCCAAAAGTGTTTTGGTTGTCGGAGGTGGTGATGGTGGTGTGCTACGAGAAATAGCC
AGACATGCCTCAGTGGAGAACATCGATATATGTGAAATAGACCAGCTAGTTATTGATGTC
TGTAAAGATTTCTTCCCACAACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCAT
GTTGGTGACGCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATT
GTTGATTCATCTGACCCAATTGGGCCAGCTCAGGAGCTTGTGGAGAAGCCCTTTTTTCAG
ACAATTGCTAGAGCTCTAAAGCCTGGTGGAGTTCTATGCAATCAAGCTGAGAGTATGTGG
CTGCACACACATCTAATTCAAGATATGCTTTCTATCTGTCGTGAAACATTCAAGGGAGCT
GTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGTGGTGTCATTGGTTTTTTGCTA
TGTGCGAAAGAAGGTCCAGCAGTGAACTTCCTTTCTCCTGTGAATCCAATTGAGAAACTG
GAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGGTTCATCGGGCT
GCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAA
AAGGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGAAGATGAAAATAATGCCGAAT
AGTGCCATTCCGACTGCTTCCTAG

Peptide Sequence

PEP ID

Os06t0528600-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:19614314:19619657:1 gene:Os06g0528600 transcript:Os06t0528600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPERMIDINE SYNTHASE 2 description:Aminopropyl transferase. (Os06t0528600-01)
Sequence

MEGGGAKDGSAAAAQTRGSGDDGSHKPLPPCCLKAKAAAAESEAKCHATVVSGWFTEPRS
HSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLT
EKDECAYQEMVTHLPLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDV
CKDFFPQLSVGFKDPRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQ
TIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLL
CAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFVRRELESHNTCAE
KDKSETKPVAKPKKMKIMPNSAIPTAS

Transcript Sequence

Transcript ID

Os06t0528600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:19614314:19619657:1 gene:Os06g0528600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPERMIDINE SYNTHASE 2 description:Aminopropyl transferase. (Os06t0528600-01)
Sequence

TCTCCCTGCTGCTGGTACTGTGCGTGGGCCGGAGGGCGAGAGTGAAGCTTGAGCCGTCTC
GCCGCGGGCGCTGCTGCTGCTGCTGCTGCTCGCGTCCGATTCCGACGAGAGGCTGGGAAC
TTCAAAGCTGAAAAGGACTAATGGAGGGTGGAGGCGCAAAAGATGGTTCTGCAGCGGCAG
CGCAAACAAGGGGGAGTGGGGATGATGGTTCCCACAAGCCGCTGCCGCCTTGCTGTCTCA
AGGCGAAGGCTGCGGCAGCAGAGTCTGAGGCAAAATGCCATGCCACAGTGGTGTCAGGGT
GGTTCACGGAACCCCGCTCGCACTCTGGTAAAACAAGCAAAGTGCAGTACTTCAACAATC
CAATGTGGCCTGGAGAAGCTCATTCTCTGAAAGTAGAGAATATTCTGTATCAAGGGAAAT
CACCATACCAAGAAATCTTAGTTTTTGAGTCCTCAACCTATGGGAATGTTCTGGTGCTTG
ATGGTATTGTGCAGCTGACCGAAAAGGATGAATGTGCATACCAGGAAATGGTTACTCACC
TTCCACTGTGCTCGATTCCATCCCCCAAAAGTGTTTTGGTTGTCGGAGGTGGTGATGGTG
GTGTGCTACGAGAAATAGCCAGACATGCCTCAGTGGAGAACATCGATATATGTGAAATAG
ACCAGCTAGTTATTGATGTCTGTAAAGATTTCTTCCCACAACTATCTGTTGGATTCAAAG
ATCCCCGTGTTCAACTTCATGTTGGTGACGCTGTGGATTTCTTGAGAAATGCCCCTGAAG
GGAAATATGATGCTATCATTGTTGATTCATCTGACCCAATTGGGCCAGCTCAGGAGCTTG
TGGAGAAGCCCTTTTTTCAGACAATTGCTAGAGCTCTAAAGCCTGGTGGAGTTCTATGCA
ATCAAGCTGAGAGTATGTGGCTGCACACACATCTAATTCAAGATATGCTTTCTATCTGTC
GTGAAACATTCAAGGGAGCTGTGCATTATGCCTGGACAAGCGTTCCTACCTATCCTAGTG
GTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTCCTTTCTCCTG
TGAATCCAATTGAGAAACTGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACA
ATTCAGAGGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAT
CACACAATACTTGTGCTGAAAAGGATAAATCAGAAACCAAGCCAGTCGCGAAACCAAAGA
AGATGAAAATAATGCCGAATAGTGCCATTCCGACTGCTTCCTAGATTCGGGCGGCCATAT
GCGACAACCATGTTCGACGTCCTTAGCTACAGTATATGCCAACTATAAGAGGAGAATGTC
GCTGTAACTCTTCTGTCTTAAGTATGGTATGTTATGCCTGACTGAATAAAAGGGAGGAAC
AGATGAGATGTGAACCAAAATAATGTTCTTCCTGATCCGTGAGCACTGTTGTAGTGTTGC
CTGTTGTACAAATGTATATTGTCACAGCACTGATGTGTTTATTATATGGATGTGGAGTGA
ATCGCATGGATAATGTGCCTTTTTATCCCCT