Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0527100-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:19544600:19553006:1 gene:Os06g0527100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 12 description:Similar to Cyclic nucleotide-gated channel A (Fragment). (Os06t0527100-01)
Sequence	ATGATGATGGGAAGAGAGGACAAATATGTGAGATTTGAGGACTGGAGATCTGAGCAGTCA GTTATGTCACCACGGAGGCATAATGCTTTAAGTTCACTTAAAGAAAGAACTGCTGGAGTT TTTGCATTCCTAGGAAACCTTGTGCATTCTGAAACCTTAAAGAGATTGGTGCTGCATGAA AGGAAGTTGACAACTAGAACTCTTCATCCTCAGGGACCATTTCTGCAAAGCTGGAACAAG ATATTTGTTTTGTCATGTATCTTTGCAGTTTCTGTGGACCCATTGTTCTTCTATATTCCG GTTATCAATGACAACAACACATGCTGGTATTTGGATAAAAAGTTGGAAATCACAGCAAGT GTCCTGCGCTTTTTCACAGATATCTTCTATATACTCCATATCATATTTCAGTTCAGGACA GGTTATATTGCGTCTTCTCTTACAACTTTTGGTCGGGGTGTCTTGGTTGAGGATAGATAT GCAATAGCAAAGCGATACTTGTCAACATATTTTCTGATCGATGTCTTTGCTGTTCTACCC CTCCCTCAGGTGGTTATTTTGGTTGTGCTACCTAATCTTGGAGGCTCAGAGGTTACAAAA GCCAAAAATATCTTGATGTTTATAGTTATATGCCAATATGTGCCTCGGCTGATCCGAATA AGGCCACTGTATCTCCAAATCACAAGGTCTGCTGGGGTAATTACAGAGACACCATGGGCT GGTGCTGTTTTGAACCTTTTAATTTACTTGCTCGCCAGTCATGTCCTTGGAGCACTCTGG TACTTGCTTTCCATTGAACGCAAAGATGCCTGCTGGAGAGACATGTGTAGTAATAATAGT ACAGTCTGTAATCAGGCATATTTGTACTGTGGGGATAAGGAAAACTCGATCTTACGGACT GCTTGCCTTCCAATCGACTCAAACGATATAGATCCGAACTTTGGAATTTATGTGCCAGCT CTAAATAATGTCTCGCAATCAACTAATTTTTTGGCAAAACTATTCTATTGTGTTTGGTGG GGTCTGCAAAATCTTAGCTCTCTGGGCCAAAACCTTAAGACAAGCACTTATGCATGGGAG AATCTGTTTGCAGTTTTTGTCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGT AATGTGCAGACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGC CGTGATACAGATCAATGGATGTCATATCGACTGCTTCCTGAGAATCTCAAGGAACGAATA CGTCGTCATGAAAAATATAGATGGCACCAGACGAGCGGGGTTGATGAAGAACTCTTGCTT ATGAACCTCCCCAAGGATCTTAGGAGGGCTATAAAACGGCATCTTTGCTTATCACTTCTT ATGAGGGTTCCAATGTTTGAAAACATGGATGATCAACTCTTGAATGCCTTGTGCGACCGC CTAAAGCCTGTTCTTTATACAGAAGGTAGCTGCATAATTCGTGAAGAGGATCCAGTAAAT GAAATGCTGTTCATCATGAGAGGTAATCTCATGAGTATGACAACGAATGGTGGAAGAACT GGCTTCTTCAACTCTGATGTTTTGAAAGGTGGAGATTTCTGTGGCGAAGAGCTCCTGACC TGGGCTCTTGACCCCACGTCAGTTTCCAGCCTCCCTAGCTCAACCAGGACAGTGAAGACG ATGTCCGAAGTCGAAGCTTTTGCCCTGAGGGCTGAAGACTTGAAGTTTGTGGCCACCCAG TTCCGACGGCTACACAGCAAACAGCTCCAGCACACGTTTAAGTTCTACTCGCAGCATTGG AGAACCTGGGCAGCCTGTTTCATACAAGCAGCCTGGCATAGGTACTGCAGAAAGAAGATC GAAGACTCTCTACGCGAGAAGGAGAAGAGGTTGCAGTTCGCAATCGTTAATGACGGTGCT ACAACTCTCAGCTTCAGGGCAGCGATATATGCTTCGCGTTTCGCTGGCAACATGATGCGG ATCTTGAGGAGAAATGCCACCCGCAAGGCTCGGTTGAAGGAAAGTGTGCCTGCAAGGTTG TTACAAAAACCAGCAGAACCCAACTTTGCTGCAGAAGAGCAGTAG

Peptide Sequence

PEP ID	Os06t0527100-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:19544600:19553006:1 gene:Os06g0527100 transcript:Os06t0527100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 12 description:Similar to Cyclic nucleotide-gated channel A (Fragment). (Os06t0527100-01)
Sequence	MMMGREDKYVRFEDWRSEQSVMSPRRHNALSSLKERTAGVFAFLGNLVHSETLKRLVLHE RKLTTRTLHPQGPFLQSWNKIFVLSCIFAVSVDPLFFYIPVINDNNTCWYLDKKLEITAS VLRFFTDIFYILHIIFQFRTGYIASSLTTFGRGVLVEDRYAIAKRYLSTYFLIDVFAVLP LPQVVILVVLPNLGGSEVTKAKNILMFIVICQYVPRLIRIRPLYLQITRSAGVITETPWA GAVLNLLIYLLASHVLGALWYLLSIERKDACWRDMCSNNSTVCNQAYLYCGDKENSILRT ACLPIDSNDIDPNFGIYVPALNNVSQSTNFLAKLFYCVWWGLQNLSSLGQNLKTSTYAWE NLFAVFVSISGLVLFALLIGNVQTYLQSAHLREEEMRVKSRDTDQWMSYRLLPENLKERI RRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHLCLSLLMRVPMFENMDDQLLNALCDR LKPVLYTEGSCIIREEDPVNEMLFIMRGNLMSMTTNGGRTGFFNSDVLKGGDFCGEELLT WALDPTSVSSLPSSTRTVKTMSEVEAFALRAEDLKFVATQFRRLHSKQLQHTFKFYSQHW RTWAACFIQAAWHRYCRKKIEDSLREKEKRLQFAIVNDGATTLSFRAAIYASRFAGNMMR ILRRNATRKARLKESVPARLLQKPAEPNFAAEEQ

Transcript Sequence

Transcript ID	Os06t0527100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:19544600:19553006:1 gene:Os06g0527100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 12 description:Similar to Cyclic nucleotide-gated channel A (Fragment). (Os06t0527100-01)
Sequence	ACCCGTTTTCGTCCTCCGCTTTCCATCGCTCCCTCCACCTCCACCGCACTACCACCACCA CCACCACCAACCGCCGTGCGGACGCCGCCGGCTTCCCGGCCGCGACGCGGAGGAGGACCG AATTCCCCCCCACCCCTCCGTCCAATCCGCGCGCACCACCTCCGAGGGAACTCCATGTAT GCAAATGTCGCCACCCTTGTAGAATCAATAAAGCTGTTCTAGCAGCTAACCTTTGGTTTG GTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAGATTTGAGGACTGG AGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAATGCTTTAAGTTCACTTAAAGAA AGAACTGCTGGAGTTTTTGCATTCCTAGGAAACCTTGTGCATTCTGAAACCTTAAAGAGA TTGGTGCTGCATGAAAGGAAGTTGACAACTAGAACTCTTCATCCTCAGGGACCATTTCTG CAAAGCTGGAACAAGATATTTGTTTTGTCATGTATCTTTGCAGTTTCTGTGGACCCATTG TTCTTCTATATTCCGGTTATCAATGACAACAACACATGCTGGTATTTGGATAAAAAGTTG GAAATCACAGCAAGTGTCCTGCGCTTTTTCACAGATATCTTCTATATACTCCATATCATA TTTCAGTTCAGGACAGGTTATATTGCGTCTTCTCTTACAACTTTTGGTCGGGGTGTCTTG GTTGAGGATAGATATGCAATAGCAAAGCGATACTTGTCAACATATTTTCTGATCGATGTC TTTGCTGTTCTACCCCTCCCTCAGGTGGTTATTTTGGTTGTGCTACCTAATCTTGGAGGC TCAGAGGTTACAAAAGCCAAAAATATCTTGATGTTTATAGTTATATGCCAATATGTGCCT CGGCTGATCCGAATAAGGCCACTGTATCTCCAAATCACAAGGTCTGCTGGGGTAATTACA GAGACACCATGGGCTGGTGCTGTTTTGAACCTTTTAATTTACTTGCTCGCCAGTCATGTC CTTGGAGCACTCTGGTACTTGCTTTCCATTGAACGCAAAGATGCCTGCTGGAGAGACATG TGTAGTAATAATAGTACAGTCTGTAATCAGGCATATTTGTACTGTGGGGATAAGGAAAAC TCGATCTTACGGACTGCTTGCCTTCCAATCGACTCAAACGATATAGATCCGAACTTTGGA ATTTATGTGCCAGCTCTAAATAATGTCTCGCAATCAACTAATTTTTTGGCAAAACTATTC TATTGTGTTTGGTGGGGTCTGCAAAATCTTAGCTCTCTGGGCCAAAACCTTAAGACAAGC ACTTATGCATGGGAGAATCTGTTTGCAGTTTTTGTCTCAATATCAGGCTTGGTTCTGTTT GCACTGCTAATTGGTAATGTGCAGACCTATTTGCAGTCAGCCCATCTGAGAGAAGAAGAA ATGAGAGTGAAAAGCCGTGATACAGATCAATGGATGTCATATCGACTGCTTCCTGAGAAT CTCAAGGAACGAATACGTCGTCATGAAAAATATAGATGGCACCAGACGAGCGGGGTTGAT GAAGAACTCTTGCTTATGAACCTCCCCAAGGATCTTAGGAGGGCTATAAAACGGCATCTT TGCTTATCACTTCTTATGAGGGTTCCAATGTTTGAAAACATGGATGATCAACTCTTGAAT GCCTTGTGCGACCGCCTAAAGCCTGTTCTTTATACAGAAGGTAGCTGCATAATTCGTGAA GAGGATCCAGTAAATGAAATGCTGTTCATCATGAGAGGTAATCTCATGAGTATGACAACG AATGGTGGAAGAACTGGCTTCTTCAACTCTGATGTTTTGAAAGGTGGAGATTTCTGTGGC GAAGAGCTCCTGACCTGGGCTCTTGACCCCACGTCAGTTTCCAGCCTCCCTAGCTCAACC AGGACAGTGAAGACGATGTCCGAAGTCGAAGCTTTTGCCCTGAGGGCTGAAGACTTGAAG TTTGTGGCCACCCAGTTCCGACGGCTACACAGCAAACAGCTCCAGCACACGTTTAAGTTC TACTCGCAGCATTGGAGAACCTGGGCAGCCTGTTTCATACAAGCAGCCTGGCATAGGTAC TGCAGAAAGAAGATCGAAGACTCTCTACGCGAGAAGGAGAAGAGGTTGCAGTTCGCAATC GTTAATGACGGTGCTACAACTCTCAGCTTCAGGGCAGCGATATATGCTTCGCGTTTCGCT GGCAACATGATGCGGATCTTGAGGAGAAATGCCACCCGCAAGGCTCGGTTGAAGGAAAGT GTGCCTGCAAGGTTGTTACAAAAACCAGCAGAACCCAACTTTGCTGCAGAAGAGCAGTAG TTCTGTTTACCACGAATGCGTAAGGAATTTTTTGTGCATGGCTTGTGCATTTTTTACTTG CTGATGTTTTTGCTTTCAGTTGACACTAGACCTACAAATTAAGGAGAGGAAAAAATCGCA ATAGGTGTCTGTATCTTTCTGTAAGATCTGTATATGTGTTCGTGTATGATAATAGGTGAT ACGTGTAATTATTATTCATCAGGTGTTTATATACAAATTGTGTTTATAGTAGTGTAGTGA GCATTCCATCCCGTGTTCCCATCAGGCTCTTGAAGTCCAGGCACGGAGCAAGATCACATT GTAACGGAGACACTTGTTTTAACTCACATATATTGACATGATATAGAATTAATGGATTGT T