Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0520600-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:19101558:19107176:1 gene:Os06g0520600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43 description:Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. (Os06t0520600-01)
Sequence	ATGCCTCAGGACGATGACTGGTTCTGGGGGCGCCCGACTCCCGTCGTCGTCGGCGACGGC GAGACGACGTCGAAGCCAAAGCCGCCGGTGGCGGGAAAGACGAAGAAGGTGGAGGAGCAG CACCCACGGCGACCGGGGGAGCCGGACTGCAGCTACTACGTCAAGTTCGGGAGCTGCAAG TTCGGCATCAGCTGCGTGTACAACCACCCGGATCCGAGGCCGCAGCATGGCGCCGACGAC AAGAAGCCGGCCGAGCAGTTCCCGCGGCGGCCCGGCGAGCCCGACTGCAGCTACTACGTC AAGTTCGGGAGCTGCAAGTTTGGGATGAATTGCAGGTTCAACCACCCTCCCCGCATGCCA GTGCCACCACAACAAGAGTATTTCTCTGGGAATGCATGCCACTGCCACCATATTGAAGGC AAAAGTAAAGTTGAGCAAGTAAAGCTGAACGTTCTTGGGCTTCCACTTCGTCCTGGGACA GGGTTGTGCTCATACTACATGAACCGGGGAATCTGCAAATTTGGCACTAACTGCAAGTTT GACCACCCAGATCCAGGCTCAGATCATGAGAAGTGGGTCGTTTCAAGTAATGCCAATCAA GTTTCCTCTCAGGTGAACATTTACTCGGTGCTTGACCATGGAGAATCGAATGAGCATACT TTTACCTCCGAAGAAGTCCATCAGCCAGGGATTCCAAGTTTTCACCAACGAATCAGTTAC ACAAGGGACCAACTTCTCCAACTTTGTCAGAATGTCGAAGTGCCCAAGGACATCTTAAAA TTTTGTCAAGATATTAATGTTGAACTGAATGGTGAAGATAAAATTTCGGGATTTGGAGCA GAGAAAGATCATGTACAAACTCCATCATATAAACGGTTTGACGCGACAGACAGCCGTGAC TGGCATTCATGGTCTGCACAAACTAATTGGGAACAGAAATTTTGGGACAACTTCTCTGAA GCAAAAGAACCCTATTCTTTAGGTTGGAAGCAAGAGAAATTTAACAAGCCTGACCAATCA AGCTTCCACTTTGATTCTAAAGATCAGTGGTTAAAATTTATAAAGTGTACACCCTGCAAA AGCACTTTAATTAAGGCTGAAGTCCCTTTGTCAATCCAGAGAGGCATTATCTCTGGCAAA GATGAAGTTCTGAAAACATTGAAAAGTATACTAAACACATTTTCACCAAAGATGTTCGAT CTTCAGAAGGGCCAGCTAATAGAAACAAGAATCTCTAGCGCTGATATTTTGAAGGATGTT ATTAATCTTATATTTGAAAAGGTTGTTGCTGAGCCAGCCTTCTGTTCGACGTATGCGCAA CTTTGCACATATCTAAATCAAAACCTCACACCATTCCCTCCTGAAGACTGTGATTGTGAA GAAATTACGTTCAAACAAGCACTGTCGAACAAATGTCAAGAAATATTCGAAAGTGCTCAC ACCGTATGTTCTGAGATTGGCAAATTGATTGGACAAGACCGAGAGATGGAGCAACGGGAT AAAGAAAGGGTAGTGAAACTTGAAACACTGGGAAATATTAATTTCATTCGAGCCCTGCTC AAGAAAAAGTTGATCACAAATAAGATAATAGATCACATTGTTCAGGCAGTGATGGATTGT TGTAAGTTTCGCTTTGAACCACTTGGAAAAGTTGATTTGCTAAATATAATATTTGAAGGC ATGCTGGATTCAGATTCAGCAGGTGATGAATCTAATATTTGCGTCAATGCTATGATTGGT GGCAATAAATCTTCCATAGCTTCAAATGATGTCGAGATGACTCGTAAGAATGTCAATAGG CAAAATGAAGAGGCAATATTACAAAAATCTTATGATGAAGTCCCAAATAACAAAATGGAT CCTCAGAAAAATTATGCAGATGGAGCAATCAGTTATCTCATTGAGAAAGAGAAGCCAACT AACTTAGAATCATCTGTGAGGATCTGTCGAGGAGGATGCAGTATTTCAGAGATAATGGAG TTAGTTGTTGATGCAGGAGCTGTGGAAGGCAGTGATGAGCATTTCATGGCTACCTTATTA TTTATTAAACCTGAATATAGGGAAATATTTCTTACCCTTGATACACGTGAAGGAAGACTT GGGTGGCTGAAAAGGATGTACAAGGTGAAGGAATAA

Peptide Sequence

PEP ID	Os06t0520600-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:19101558:19107176:1 gene:Os06g0520600 transcript:Os06t0520600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43 description:Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. (Os06t0520600-01)
Sequence	MPQDDDWFWGRPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCK FGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMP VPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKF DHPDPGSDHEKWVVSSNANQVSSQVNIYSVLDHGESNEHTFTSEEVHQPGIPSFHQRISY TRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRD WHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCK STLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDV INLIFEKVVAEPAFCSTYAQLCTYLNQNLTPFPPEDCDCEEITFKQALSNKCQEIFESAH TVCSEIGKLIGQDREMEQRDKERVVKLETLGNINFIRALLKKKLITNKIIDHIVQAVMDC CKFRFEPLGKVDLLNIIFEGMLDSDSAGDESNICVNAMIGGNKSSIASNDVEMTRKNVNR QNEEAILQKSYDEVPNNKMDPQKNYADGAISYLIEKEKPTNLESSVRICRGGCSISEIME LVVDAGAVEGSDEHFMATLLFIKPEYREIFLTLDTREGRLGWLKRMYKVKE

Transcript Sequence

Transcript ID	Os06t0520600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:19101558:19107176:1 gene:Os06g0520600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43 description:Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. (Os06t0520600-01)
Sequence	TGGGACTAGCTGCATTTCCTTCTCTTCTAATGACCCCGTTCATGGTTGATTAGTTTGAGA TTATCATCAATTCTCTGTTTGTCGGTGGAGCACCTGCAGCACCTCCGACGAATCCGCCGC TGCTTCGCCGTCGCGTGTGCTGGAGCGGCTCGCCGCCAGCTCCATGCCTCAGGACGATGA CTGGTTCTGGGGGCGCCCGACTCCCGTCGTCGTCGGCGACGGCGAGACGACGTCGAAGCC AAAGCCGCCGGTGGCGGGAAAGACGAAGAAGGTGGAGGAGCAGCACCCACGGCGACCGGG GGAGCCGGACTGCAGCTACTACGTCAAGTTCGGGAGCTGCAAGTTCGGCATCAGCTGCGT GTACAACCACCCGGATCCGAGGCCGCAGCATGGCGCCGACGACAAGAAGCCGGCCGAGCA GTTCCCGCGGCGGCCCGGCGAGCCCGACTGCAGCTACTACGTCAAGTTCGGGAGCTGCAA GTTTGGGATGAATTGCAGGTTCAACCACCCTCCCCGCATGCCAGTGCCACCACAACAAGA GTATTTCTCTGGGAATGCATGCCACTGCCACCATATTGAAGGCAAAAGTAAAGTTGAGCA AGTAAAGCTGAACGTTCTTGGGCTTCCACTTCGTCCTGGGACAGGGTTGTGCTCATACTA CATGAACCGGGGAATCTGCAAATTTGGCACTAACTGCAAGTTTGACCACCCAGATCCAGG CTCAGATCATGAGAAGTGGGTCGTTTCAAGTAATGCCAATCAAGTTTCCTCTCAGGTGAA CATTTACTCGGTGCTTGACCATGGAGAATCGAATGAGCATACTTTTACCTCCGAAGAAGT CCATCAGCCAGGGATTCCAAGTTTTCACCAACGAATCAGTTACACAAGGGACCAACTTCT CCAACTTTGTCAGAATGTCGAAGTGCCCAAGGACATCTTAAAATTTTGTCAAGATATTAA TGTTGAACTGAATGGTGAAGATAAAATTTCGGGATTTGGAGCAGAGAAAGATCATGTACA AACTCCATCATATAAACGGTTTGACGCGACAGACAGCCGTGACTGGCATTCATGGTCTGC ACAAACTAATTGGGAACAGAAATTTTGGGACAACTTCTCTGAAGCAAAAGAACCCTATTC TTTAGGTTGGAAGCAAGAGAAATTTAACAAGCCTGACCAATCAAGCTTCCACTTTGATTC TAAAGATCAGTGGTTAAAATTTATAAAGTGTACACCCTGCAAAAGCACTTTAATTAAGGC TGAAGTCCCTTTGTCAATCCAGAGAGGCATTATCTCTGGCAAAGATGAAGTTCTGAAAAC ATTGAAAAGTATACTAAACACATTTTCACCAAAGATGTTCGATCTTCAGAAGGGCCAGCT AATAGAAACAAGAATCTCTAGCGCTGATATTTTGAAGGATGTTATTAATCTTATATTTGA AAAGGTTGTTGCTGAGCCAGCCTTCTGTTCGACGTATGCGCAACTTTGCACATATCTAAA TCAAAACCTCACACCATTCCCTCCTGAAGACTGTGATTGTGAAGAAATTACGTTCAAACA AGCACTGTCGAACAAATGTCAAGAAATATTCGAAAGTGCTCACACCGTATGTTCTGAGAT TGGCAAATTGATTGGACAAGACCGAGAGATGGAGCAACGGGATAAAGAAAGGGTAGTGAA ACTTGAAACACTGGGAAATATTAATTTCATTCGAGCCCTGCTCAAGAAAAAGTTGATCAC AAATAAGATAATAGATCACATTGTTCAGGCAGTGATGGATTGTTGTAAGTTTCGCTTTGA ACCACTTGGAAAAGTTGATTTGCTAAATATAATATTTGAAGGCATGCTGGATTCAGATTC AGCAGGTGATGAATCTAATATTTGCGTCAATGCTATGATTGGTGGCAATAAATCTTCCAT AGCTTCAAATGATGTCGAGATGACTCGTAAGAATGTCAATAGGCAAAATGAAGAGGCAAT ATTACAAAAATCTTATGATGAAGTCCCAAATAACAAAATGGATCCTCAGAAAAATTATGC AGATGGAGCAATCAGTTATCTCATTGAGAAAGAGAAGCCAACTAACTTAGAATCATCTGT GAGGATCTGTCGAGGAGGATGCAGTATTTCAGAGATAATGGAGTTAGTTGTTGATGCAGG AGCTGTGGAAGGCAGTGATGAGCATTTCATGGCTACCTTATTATTTATTAAACCTGAATA TAGGGAAATATTTCTTACCCTTGATACACGTGAAGGAAGACTTGGGTGGCTGAAAAGGAT GTACAAGGTGAAGGAATAAGTGTTGGACCTTAGTTCATGGATTCTTGCCTATTTTCTACT CTTATGGTGTGCCTACTCATGAACTATTTACATGTGATTTATTGTGTAATGCTACCTAAA TTTATTAACATCCTACATTTCCATTTGAGTTTGCTTTAAGTGAGATGAATTCCTATGTAA TTGGTAGTATGTACAGTGTGGCCTATCGAGTTGTTTCGCTAGAGAATGCAATTATTAAAT GGTGTTGCTTGT