Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0502900-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:17812085:17816172:1 gene:Os06g0502900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DGCR14 protein. (Os06t0502900-01);Similar to DGCR14 protein. (Os06t0502900-02)
Sequence

ATGCTCCGCTCGCCGGGCCACTCCCCGCGCCACCTCTCCCCGTCCCCGGCGCCGTCCACG
CCTCGCCCCTCCTCCCCGACGCCCTCGTCCGCCTCCGCCTCCGCCTCCGCATCGGCCCTC
GCCGCCGCCGCCACTACCACCACCTCCTCCAAGCGCCGCCGCCCGGAGGTGCTCGACGAG
GACACCTACGTCGCGGCCGTCGAGCGGATCATCGAGCGGGACTTCTTCCCGGACCTCCCG
CGCCTCCGCGACCGCCTCGACTGGCTCCAGGCCCTGCGCTCCCGCGACCCGCTCGTCCTC
CGCGACGCGCAGCTCAAGATCCTCGAGCGCCGCCGCCGCGCCCAGCGCCAGCGCCAGGGC
GGCCCCGTGCCCACCCCGACGCCGGCCACCTCCACCGCGCTCCGCTCCCCGTCCTTCCTC
GCCACCCCCTCCGTCGCCCCCTCCGTCGCCGGCGACGAGGGCGCCGACGTCGACGACGAC
GTCGAGGCCGCGCTCTCGCTCGACGACTTCTTCCGCCGCTTCACCAGCGAGGACAACGAG
TCCTTCTCCCGCATCCTCGAGAAGGTGAACCACCGCCGCCGCGAGCGCTATGCCCACCTG
CTGGAGCCTGGTGAGGTGGCGAAGGCGCCCCAGTTGGAGGACGCCAAGCGCGACAGGATA
ACCGATGGGTACGGCACGTCGGGGCAGCCGCTGAGCACCTTGGAGGGTGCCAAGTTCACG
GCCAAGAACCTGCTCATGTACTACCCGGCTGACCGTGGGGAGGCCCCGCTTACTGATGAG
GAGCGCGCCGAGCGGCTCAAGGGGATGACCAAGGAGATCGACAGGTCGAACACCAGGTTC
CATGGGAAGTCTTCTGTTGATGATGGTGCAAAGGAGGAGGAGGCAGCTGCTATACTTTAT
GCGCCAGTTGCAGGTTCCACTCCCGGAGGTATGGCATACCATGATCCTGATAAAGCGAAG
AAGTACGATTTGGAGGATCTAAGGAAGACTCCAAACCCATTCTACGTTGAGTCAGGGAAG
AATGCAAACAATGGGTATAGTTTTGTGAGAACGCCATCGCCAGCACCTGGCGTGGATGAG
TCACCGTTCATGACATGGGGTGAGATTGATGGAACACCACTGAGACTGGACCCAGAGGAG
ACACCGGGTGGTTCTGGGGGAAGTGATAGGGCGCATTTCAAGATCCCACCTCCGCCTGCT
CGGGATGTAAAGGCACATCTGCTGTCAAGGGATGCAGCAAGGAAGATAAAGGAGCGCACT
AAAATGTTCCACAAGCCACCGCTACCATCGCCTGTGAGGGGAGGAAGTGCAAGCCCAAGG
ACCTTCTCTCCTGCAGCACAGAAGTTTGTTAGGAATGCCATTGCAAAGTCCTCTCGTACC
ATTGATGAGTCGCTCCGAGCGAGCTACAGAGGTACAACCCCATCTGCAACCACTCCAAAG
ACAAGGTTTTCAAGAGACCCAAGCTTGGGATCACGATCTCCATCGACAAGACAGGGTTCC
ACCCCTCCCTGGTGA

Peptide Sequence

PEP ID

Os06t0502900-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:17812085:17816172:1 gene:Os06g0502900 transcript:Os06t0502900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DGCR14 protein. (Os06t0502900-01);Similar to DGCR14 protein. (Os06t0502900-02)
Sequence

MLRSPGHSPRHLSPSPAPSTPRPSSPTPSSASASASASALAAAATTTTSSKRRRPEVLDE
DTYVAAVERIIERDFFPDLPRLRDRLDWLQALRSRDPLVLRDAQLKILERRRRAQRQRQG
GPVPTPTPATSTALRSPSFLATPSVAPSVAGDEGADVDDDVEAALSLDDFFRRFTSEDNE
SFSRILEKVNHRRRERYAHLLEPGEVAKAPQLEDAKRDRITDGYGTSGQPLSTLEGAKFT
AKNLLMYYPADRGEAPLTDEERAERLKGMTKEIDRSNTRFHGKSSVDDGAKEEEAAAILY
APVAGSTPGGMAYHDPDKAKKYDLEDLRKTPNPFYVESGKNANNGYSFVRTPSPAPGVDE
SPFMTWGEIDGTPLRLDPEETPGGSGGSDRAHFKIPPPPARDVKAHLLSRDAARKIKERT
KMFHKPPLPSPVRGGSASPRTFSPAAQKFVRNAIAKSSRTIDESLRASYRGTTPSATTPK
TRFSRDPSLGSRSPSTRQGSTPPW

Transcript Sequence

Transcript ID

Os06t0502900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:17812085:17816172:1 gene:Os06g0502900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DGCR14 protein. (Os06t0502900-01);Similar to DGCR14 protein. (Os06t0502900-02)
Sequence

AATCACAAACCAACCAGATTCACCCAAACGCCGAACCAAACTTCGCATCCCCGAATCCCC
GATCCCCAAATCCCTAACCCTAGCCTCGCCCGCCGCCACCGCCACCGCCGCCGCCGCCGC
GATGCTCCGCTCGCCGGGCCACTCCCCGCGCCACCTCTCCCCGTCCCCGGCGCCGTCCAC
GCCTCGCCCCTCCTCCCCGACGCCCTCGTCCGCCTCCGCCTCCGCCTCCGCATCGGCCCT
CGCCGCCGCCGCCACTACCACCACCTCCTCCAAGCGCCGCCGCCCGGAGGTGCTCGACGA
GGACACCTACGTCGCGGCCGTCGAGCGGATCATCGAGCGGGACTTCTTCCCGGACCTCCC
GCGCCTCCGCGACCGCCTCGACTGGCTCCAGGCCCTGCGCTCCCGCGACCCGCTCGTCCT
CCGCGACGCGCAGCTCAAGATCCTCGAGCGCCGCCGCCGCGCCCAGCGCCAGCGCCAGGG
CGGCCCCGTGCCCACCCCGACGCCGGCCACCTCCACCGCGCTCCGCTCCCCGTCCTTCCT
CGCCACCCCCTCCGTCGCCCCCTCCGTCGCCGGCGACGAGGGCGCCGACGTCGACGACGA
CGTCGAGGCCGCGCTCTCGCTCGACGACTTCTTCCGCCGCTTCACCAGCGAGGACAACGA
GTCCTTCTCCCGCATCCTCGAGAAGGTGAACCACCGCCGCCGCGAGCGCTATGCCCACCT
GCTGGAGCCTGGTGAGGTGGCGAAGGCGCCCCAGTTGGAGGACGCCAAGCGCGACAGGAT
AACCGATGGGTACGGCACGTCGGGGCAGCCGCTGAGCACCTTGGAGGGTGCCAAGTTCAC
GGCCAAGAACCTGCTCATGTACTACCCGGCTGACCGTGGGGAGGCCCCGCTTACTGATGA
GGAGCGCGCCGAGCGGCTCAAGGGGATGACCAAGGAGATCGACAGGTCGAACACCAGGTT
CCATGGGAAGTCTTCTGTTGATGATGGTGCAAAGGAGGAGGAGGCAGCTGCTATACTTTA
TGCGCCAGTTGCAGGTTCCACTCCCGGAGGTATGGCATACCATGATCCTGATAAAGCGAA
GAAGTACGATTTGGAGGATCTAAGGAAGACTCCAAACCCATTCTACGTTGAGTCAGGGAA
GAATGCAAACAATGGGTATAGTTTTGTGAGAACGCCATCGCCAGCACCTGGCGTGGATGA
GTCACCGTTCATGACATGGGGTGAGATTGATGGAACACCACTGAGACTGGACCCAGAGGA
GACACCGGGTGGTTCTGGGGGAAGTGATAGGGCGCATTTCAAGATCCCACCTCCGCCTGC
TCGGGATGTAAAGGCACATCTGCTGTCAAGGGATGCAGCAAGGAAGATAAAGGAGCGCAC
TAAAATGTTCCACAAGCCACCGCTACCATCGCCTGTGAGGGGAGGAAGTGCAAGCCCAAG
GACCTTCTCTCCTGCAGCACAGAAGTTTGTTAGGAATGCCATTGCAAAGTCCTCTCGTAC
CATTGATGAGTCGCTCCGAGCGAGCTACAGAGGTACAACCCCATCTGCAACCACTCCAAA
GACAAGGTTTTCAAGAGACCCAAGCTTGGGATCACGATCTCCATCGACAAGACAGGGTTC
CACCCCTCCCTGGTGATTTCAATAAAACTCATTGTTGCTTATTTGACCCTCCTTTTCAAA
AACGAACATCCGTGGTGAATTAACGGTGTTAAGTTAGGGTTTATAGGAAATCCACTCCAG
AAATGAGATGTAAAATCTGCAATTCCTGTGCAATTCCACCTTGGGCCCGGCATTGTGGAC
GGAGTACAGCTTCCGGGGGCGCAGCCGCGCAGGTTGTGACAGTGCACGGGCACGTCTTGG
CCGGGGTAGACCCGCTCGTCGTCGGTGAAGTAGATGCTGTCGCTGGCGCACCACGGCAGG
TGCCGCGCGTCGGTGACGAACGCCATACCGGGTCCCTGTATTAGTATTAGTTCTCATAGT
ATGTTTTTTGAGAGGAATTCAATTTCATCTAAAATTGCTTGGTGAAGCAAACATGTAAGG
ATTTGAGGAATGGTTCACTGAGGAACTGATAGGCTTGAGAGGAACTGATTGGCTCGAGAG
GGATCTTGTCTATGATATATATTGAAAACTTTAAAATCAATATGTGGTTATTTCAGTTAG
TATC