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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0484600-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:16509328:16512799:1 gene:Os06g0484600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pherophorin-S precursor. (Os06t0484600-01)
Sequence

ATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCCGC
CGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCGTT
GCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTCCT
TCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGGGG
TCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGGCG
GACACGGTCACCGTCGTCGACACATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTT
TCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACAAGGCTATA
TGGGAGGAGCTCCAAAGCACCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCT
GAGGCTGCTGCCAACCAGTAG

Peptide Sequence

PEP ID

Os06t0484600-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:16509328:16512799:1 gene:Os06g0484600 transcript:Os06t0484600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pherophorin-S precursor. (Os06t0484600-01)
Sequence

MQQMRSAAAAPCSLAAMLLRRFAYTSYSSSCGPIRRHAAVALSSTTTTTTRFAAWSPPPP
SGGARSRGFAAWASAPGPAGSTDSPAMQALETKIKEQLEADTVTVVDTSGDGRHVCIDVV
SKVFEGKSAVNRQRMVYKAIWEELQSTVHAVDQMTTKTPSEAAANQ

Transcript Sequence

Transcript ID

Os06t0484600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:16509328:16512799:1 gene:Os06g0484600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pherophorin-S precursor. (Os06t0484600-01)
Sequence

AGCTGAAGGCTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCT
CTCCACCGGCGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCA
TGCTCCTCCGCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTC
ACGCCGCCGTTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCC
CTCCTCCTCCTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCG
GGCCGGCGGGGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGC
AGCTGGAGGCGGACACGGTCACCGTCGTCGACACATCTGGCGACGGCCGCCATGTCTGCA
TAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTT
ACAAGGCTATATGGGAGGAGCTCCAAAGCACCGTGCATGCTGTGGACCAAATGACGACCA
AGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAG
TGCCACAGTGGGAACTGTTGTACTGGGACCTGACCATTGCCGAGAGGGATCACGATTCTT
TATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTCAAG
CGTTCAG