Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0480000-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:16264256:16270836:-1 gene:Os06g0480000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 74, U-box protein 74 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0480000-01)
Sequence	ATGGAGAATAATAATGATGGAGTGATTGGAATATCCTGGCGTAATTCTAATCCAAAGGTT CACAGCTCAATGTGCAGTGAATTGACAATGATGTTAGATAAAGTCTCTTCTATTCTTCCC TCAATCGAAACTGCTCAACCAGGATGTAAAGCGGGTATAGAGGAACTATGCAACCTGTAC AACATAGTTGACAAAGGAAAACTCATAATCCAGAACTGCATTGAGTGCAGTAGTCTTTAC TTGGCTATTACAGGGGAGGCAACTGCAATGCGGTGCGAAAGGATAAGAGATGCGCTGAGG CGAAGCTTGTTCCTGGTTCAGAATATGGTCCCGTCATCATTAGCTAATCAGGTGGCTGAT GTTCATGATGATCTTGGGGATGTGAAATTCATTGTTGACCCAGAAGAAGATGAGGCTGGC AAAGCCATTTTGGAGATGCTTCGGCAGTCTGATGCAACCCAAGAACATGAACTCCAGACT TTCTTGTTTGCAGCGTCAAAGTTAAATTTGACGTCACCAAAGGCTATCTTAATTGAAAGA CGAGCAATCAAGAAACTACTGGACAAGATCAATGGTAATGATCCCAAAAAGGAAGGAATA CTCAAATTTTTTCAATATCTAGTTAGGAAATATGGAAAGACTATGAAGCCTGAGGGTAGT GCAAAGAATGAAGGTGTGGATGTTGCAAACGTTACTTCGAGTACAAACCTAATTGCTAGT GGTACCGATGCTCCACAGAAATGCTTTTCACCTACAAACTCTTGGACTGGAAGATGTGAA GAGCAGAATAATTTGTCACGATTTTCTACTCCTCCAGAGTTCTGCTGCCCACTATCTATG AAGCTGATGTACGATCCTGTGATAATAGCATCTGGACAAACCTATGAGAGAGAGAACATT GAGAAATGGTTCAGTGAGGGATATGATATTTGTCCTAGGACACAGTTAAAGTTAGAAAAT TTCACGATTACTCCAAATACTTGTATGAAGGCTGTGATCTGCAACTGGTGCAAAGATAAT GAGCTTGAATTCACTTCTTTACCTGAACAATTTCATAGTTACTCTGTTTCAAGTCTACAC AATATCTCAGCACCTCTAGTTGCTGGAACAAAGAGAGATTACATGTCTGATCATAGCAGT TCATCTGTTGCATTATCTGGTTCTAGTTATGTATCATCTCCAATGCGGGAAACAGAAGAG TCAAGGACTAATTCTACTCAGTTTTTTTCAAACGCTTATTACCAGTTGTATTTGTCCTTC AGCAGCTTCAACAAGGAGATGTTTCTGAATTTCTTTTACGAGCTGTCCGAGCTTCCAATG GAACTTCAAGTGAAGGCTGTCAGAGATTTCAAAAGTGTTCTGAATCGTGAATATCAAATT TGGCGTTCTATGATTTCCAATGGTTTTTTAGAAGCATTTCTTGAGTTTCTTAAGAACGAT AATGGAAAATGCACAATGGAAGCTCAAAGAACTGGCATTCAGTTTTTTCTTGCTTTTCTA CGTAATAGCAGGACCCGAATTCCATCCATTAGTGAAGATGCAGTGCGTCTCGTTGCTTCA TTTCTTGATTCAGAGTTAAAAACTGAAGCATTGGAGATACTCCATGAACTGCTGCAGCAA CCAAGTTGTCGGAAATCTCGTCTCATGGCATCTGTTGTTGCTCCATCTGTGTTTCTAGCT TGGGATAGTGCAGACTCCCTGTGCCTAGAACTAGTTTTGAAGATCATCTGCGAGCTTTCA TTCAAAAATGATGTACAATCTTTCCTAATTTCTTCTGGAATAATCTCAAAGCTATCTCCA ATTCTCAGTCAAGGGAAATCGCCTGAGTGTTGCCTAAAGATTCTACTAAATTTAAGTGAA GGGAAACAAGCTGCGGATCTCATTATCAGAACTGATCAATGCCTCAGTTCTATTTCAGAT TATCTGGACACAGGAAGCTCCGTGGAACGCGAGCATGCGTCAGGTATCCTTCTTGCCTTA TGCTCTCGCAGCATCGACGATTGTGTTCTTGTCATGAAGGAAGGTGTCATCCCTGCGCTG GTCGATTTGTCGGTCAATGGAACTGAGGTTGCAAAGGCTTCTTCAATCAAGTTGCTTCAA CTTCTCAGGGACTCTAGACAAAGCGACCAGTTTGGCAATTCATGTTCAAGTGAGGTGGCT GTCAATGGTGCAGCAGAGAATTCGCCCATTGGCACGATCTGCAAACAACCAATATCAAAA TCAGCTCGGTATATCTCAAGAAAGCTCAGCATTTTCTCGAAACCTCGATCGCTGACCCTC GTCTGA

Peptide Sequence

PEP ID	Os06t0480000-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:16264256:16270836:-1 gene:Os06g0480000 transcript:Os06t0480000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 74, U-box protein 74 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0480000-01)
Sequence	MENNNDGVIGISWRNSNPKVHSSMCSELTMMLDKVSSILPSIETAQPGCKAGIEELCNLY NIVDKGKLIIQNCIECSSLYLAITGEATAMRCERIRDALRRSLFLVQNMVPSSLANQVAD VHDDLGDVKFIVDPEEDEAGKAILEMLRQSDATQEHELQTFLFAASKLNLTSPKAILIER RAIKKLLDKINGNDPKKEGILKFFQYLVRKYGKTMKPEGSAKNEGVDVANVTSSTNLIAS GTDAPQKCFSPTNSWTGRCEEQNNLSRFSTPPEFCCPLSMKLMYDPVIIASGQTYERENI EKWFSEGYDICPRTQLKLENFTITPNTCMKAVICNWCKDNELEFTSLPEQFHSYSVSSLH NISAPLVAGTKRDYMSDHSSSSVALSGSSYVSSPMRETEESRTNSTQFFSNAYYQLYLSF SSFNKEMFLNFFYELSELPMELQVKAVRDFKSVLNREYQIWRSMISNGFLEAFLEFLKND NGKCTMEAQRTGIQFFLAFLRNSRTRIPSISEDAVRLVASFLDSELKTEALEILHELLQQ PSCRKSRLMASVVAPSVFLAWDSADSLCLELVLKIICELSFKNDVQSFLISSGIISKLSP ILSQGKSPECCLKILLNLSEGKQAADLIIRTDQCLSSISDYLDTGSSVEREHASGILLAL CSRSIDDCVLVMKEGVIPALVDLSVNGTEVAKASSIKLLQLLRDSRQSDQFGNSCSSEVA VNGAAENSPIGTICKQPISKSARYISRKLSIFSKPRSLTLV

Transcript Sequence

Transcript ID	Os06t0480000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:16264256:16270836:-1 gene:Os06g0480000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 74, U-box protein 74 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0480000-01)
Sequence	ACCATTAACTCCCCACTCACTCTCACGTCTCACCGGCGCAGGAAGGAGAAGTCCTCGTGT TTCGTCCTCTCTCCCTCCTCGATCCTACCCCTTGCCGGCGTCTTGCTTCTCCTCCTCCCA CTTGAGCGGCAGCCGTCGCCGTGATGTAGCAGGCAGTCCCGCCGAATCGATCCCGCGGTA GCTAGCTAGCTGCAGGCTGCAGCAGCTAAGTCCAACAATTTTAGGGGGGAAGAACCCAAT CTTGTGAACGAAAGAACTAGTCTGGGTCAGCCAAGAATCCAGCCAAGATTATTTCTATCT GTCCCGCGGGGGCAGTTTAAGGTTTCTTCATCTGCTCCAGAAACTCAGGACAGAAGCAGT TTACTGATTATAATCACTTTTGCTCTCTGGGACAAGAAAGGAAGAGGGGCAAATCCAAAA GAGTTTGATACTTTTATCACGGATTACTGTTAGTCGATGGAGAATAATAATGATGGAGTG ATTGGAATATCCTGGCGTAATTCTAATCCAAAGGTTCACAGCTCAATGTGCAGTGAATTG ACAATGATGTTAGATAAAGTCTCTTCTATTCTTCCCTCAATCGAAACTGCTCAACCAGGA TGTAAAGCGGGTATAGAGGAACTATGCAACCTGTACAACATAGTTGACAAAGGAAAACTC ATAATCCAGAACTGCATTGAGTGCAGTAGTCTTTACTTGGCTATTACAGGGGAGGCAACT GCAATGCGGTGCGAAAGGATAAGAGATGCGCTGAGGCGAAGCTTGTTCCTGGTTCAGAAT ATGGTCCCGTCATCATTAGCTAATCAGGTGGCTGATGTTCATGATGATCTTGGGGATGTG AAATTCATTGTTGACCCAGAAGAAGATGAGGCTGGCAAAGCCATTTTGGAGATGCTTCGG CAGTCTGATGCAACCCAAGAACATGAACTCCAGACTTTCTTGTTTGCAGCGTCAAAGTTA AATTTGACGTCACCAAAGGCTATCTTAATTGAAAGACGAGCAATCAAGAAACTACTGGAC AAGATCAATGGTAATGATCCCAAAAAGGAAGGAATACTCAAATTTTTTCAATATCTAGTT AGGAAATATGGAAAGACTATGAAGCCTGAGGGTAGTGCAAAGAATGAAGGTGTGGATGTT GCAAACGTTACTTCGAGTACAAACCTAATTGCTAGTGGTACCGATGCTCCACAGAAATGC TTTTCACCTACAAACTCTTGGACTGGAAGATGTGAAGAGCAGAATAATTTGTCACGATTT TCTACTCCTCCAGAGTTCTGCTGCCCACTATCTATGAAGCTGATGTACGATCCTGTGATA ATAGCATCTGGACAAACCTATGAGAGAGAGAACATTGAGAAATGGTTCAGTGAGGGATAT GATATTTGTCCTAGGACACAGTTAAAGTTAGAAAATTTCACGATTACTCCAAATACTTGT ATGAAGGCTGTGATCTGCAACTGGTGCAAAGATAATGAGCTTGAATTCACTTCTTTACCT GAACAATTTCATAGTTACTCTGTTTCAAGTCTACACAATATCTCAGCACCTCTAGTTGCT GGAACAAAGAGAGATTACATGTCTGATCATAGCAGTTCATCTGTTGCATTATCTGGTTCT AGTTATGTATCATCTCCAATGCGGGAAACAGAAGAGTCAAGGACTAATTCTACTCAGTTT TTTTCAAACGCTTATTACCAGTTGTATTTGTCCTTCAGCAGCTTCAACAAGGAGATGTTT CTGAATTTCTTTTACGAGCTGTCCGAGCTTCCAATGGAACTTCAAGTGAAGGCTGTCAGA GATTTCAAAAGTGTTCTGAATCGTGAATATCAAATTTGGCGTTCTATGATTTCCAATGGT TTTTTAGAAGCATTTCTTGAGTTTCTTAAGAACGATAATGGAAAATGCACAATGGAAGCT CAAAGAACTGGCATTCAGTTTTTTCTTGCTTTTCTACGTAATAGCAGGACCCGAATTCCA TCCATTAGTGAAGATGCAGTGCGTCTCGTTGCTTCATTTCTTGATTCAGAGTTAAAAACT GAAGCATTGGAGATACTCCATGAACTGCTGCAGCAACCAAGTTGTCGGAAATCTCGTCTC ATGGCATCTGTTGTTGCTCCATCTGTGTTTCTAGCTTGGGATAGTGCAGACTCCCTGTGC CTAGAACTAGTTTTGAAGATCATCTGCGAGCTTTCATTCAAAAATGATGTACAATCTTTC CTAATTTCTTCTGGAATAATCTCAAAGCTATCTCCAATTCTCAGTCAAGGGAAATCGCCT GAGTGTTGCCTAAAGATTCTACTAAATTTAAGTGAAGGGAAACAAGCTGCGGATCTCATT ATCAGAACTGATCAATGCCTCAGTTCTATTTCAGATTATCTGGACACAGGAAGCTCCGTG GAACGCGAGCATGCGTCAGGTATCCTTCTTGCCTTATGCTCTCGCAGCATCGACGATTGT GTTCTTGTCATGAAGGAAGGTGTCATCCCTGCGCTGGTCGATTTGTCGGTCAATGGAACT GAGGTTGCAAAGGCTTCTTCAATCAAGTTGCTTCAACTTCTCAGGGACTCTAGACAAAGC GACCAGTTTGGCAATTCATGTTCAAGTGAGGTGGCTGTCAATGGTGCAGCAGAGAATTCG CCCATTGGCACGATCTGCAAACAACCAATATCAAAATCAGCTCGGTATATCTCAAGAAAG CTCAGCATTTTCTCGAAACCTCGATCGCTGACCCTCGTCTGATGAGTCGAGTTTGATTTT GGTTGGAGCTTTGTACATTTTCAAACACTGCCCAACCAGCTGGTGTACAGTTTGTAGCAG ATAGTAGTGTCCAGATGAAATGCTTGATGGGATGTTTTTTCAACCCCATGTACTAGTGTT TCTTCTAGAGTTTGTATTTGCAGTACTTTTGCTTTTCTTTACTAGGTTGTTTTAGATAAA GACATACGGTGAACAGGTTTTATGTCGAAAGTTGCATTTTATTCTCTGCTGTTGCATATA CAGTTGAAAATCTGAAGGGGCAGGCAGCACATGTCAGTCTGAAGGATGCAACACCTTTGA TAATATGGCGTCTTTGTTATGTGTGTGTGTGCGTGTGTGTATTTAAAAGGATGAATAGTC GAAGTTTAAATATGAATAGTATTCGGTTACCGTATACTTTATTTCC