Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0479400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:16244360:16247112:-1 gene:Os06g0479400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phenylcoumaran benzylic ether reductase homolog TH6. (Os06t0479400-01)
Sequence

ATGGAACCTGGAGATCGTAATAAGAGCAGGATCCTTATCATCGGCGGCACGGGGCACCTC
GGCAAGTTCATCGTGGCCGCGAGCGCGCGCGCCGGCCACCCGACCTCCGCCCTCGTGCGC
GCCACCGCGCCGCCTCCTCCGGCGACGGGCGGCGGAGGAAGCAGCTCCAGGGCGCGGCTG
CTGCAGAGCTTCAGGGACGCCGGCGTCACCATCCTGCAGGGCGACATCGGCGACCACGAT
CTCCTGGTGAAGGCGGTGAGGGCCGCCGACGTCGTGATATCGGTCGTCGGCTACCATGAC
GTCGGCGAACAGATGAAGATCATCGCCGCCATCAAGGAGGCCGGAAACATCAAGAGGTTC
ATCCCGTCGGATTTCGGCAACGACGCCGACCACGCGCATATCGTCGAGCCGGCGAAGGCG
ACCTTCGACGTCGAGGCGCAGATCCGGCGAACAGTGGAGGCCGAGGGGATCCCCTACACG
TTCGTCAGCTGCAACTTTTTCGCGGGGTACTATCTCCCCACGCTTGTGCAGCCTGGAGCC
AGCGGCCTCCCAGCTGACAAGGTTGTCATTCTGGGAGACGGCAACACCAAAAGCAATATT
TGTCGACGAGGAGGACATTGCAACGTTTACCATCAAAGGAGTGGATGA

Peptide Sequence

PEP ID

Os06t0479400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:16244360:16247112:-1 gene:Os06g0479400 transcript:Os06t0479400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phenylcoumaran benzylic ether reductase homolog TH6. (Os06t0479400-01)
Sequence

MEPGDRNKSRILIIGGTGHLGKFIVAASARAGHPTSALVRATAPPPPATGGGGSSSRARL
LQSFRDAGVTILQGDIGDHDLLVKAVRAADVVISVVGYHDVGEQMKIIAAIKEAGNIKRF
IPSDFGNDADHAHIVEPAKATFDVEAQIRRTVEAEGIPYTFVSCNFFAGYYLPTLVQPGA
SGLPADKVVILGDGNTKSNICRRGGHCNVYHQRSG

Transcript Sequence

Transcript ID

Os06t0479400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:16244360:16247112:-1 gene:Os06g0479400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phenylcoumaran benzylic ether reductase homolog TH6. (Os06t0479400-01)
Sequence

AGGTGCACCCGCCCGCACACGGTCGCGCTGAATTTAGCTCCGCCACCGTCGTCGCCGCGT
CGTCGGAATCGATAATCCGATGGAACCTGGAGATCGTAATAAGAGCAGGATCCTTATCAT
CGGCGGCACGGGGCACCTCGGCAAGTTCATCGTGGCCGCGAGCGCGCGCGCCGGCCACCC
GACCTCCGCCCTCGTGCGCGCCACCGCGCCGCCTCCTCCGGCGACGGGCGGCGGAGGAAG
CAGCTCCAGGGCGCGGCTGCTGCAGAGCTTCAGGGACGCCGGCGTCACCATCCTGCAGGG
CGACATCGGCGACCACGATCTCCTGGTGAAGGCGGTGAGGGCCGCCGACGTCGTGATATC
GGTCGTCGGCTACCATGACGTCGGCGAACAGATGAAGATCATCGCCGCCATCAAGGAGGC
CGGAAACATCAAGAGGTTCATCCCGTCGGATTTCGGCAACGACGCCGACCACGCGCATAT
CGTCGAGCCGGCGAAGGCGACCTTCGACGTCGAGGCGCAGATCCGGCGAACAGTGGAGGC
CGAGGGGATCCCCTACACGTTCGTCAGCTGCAACTTTTTCGCGGGGTACTATCTCCCCAC
GCTTGTGCAGCCTGGAGCCAGCGGCCTCCCAGCTGACAAGGTTGTCATTCTGGGAGACGG
CAACACCAAAAGCAATATTTGTCGACGAGGAGGACATTGCAACGTTTACCATCAAAGGAG
TGGATGATCCAAGGATGCTGAACAAGGTCCTGCATATAAGGCCACCAGAGAATGCCCTGT
CAATGAACGATCTCGTTTCCCTGTGGGAGAAGAAGATGGGGAGGACCTTTGAGAGAGTCT
ATCTTGTAAAATCAATTATTATTCTATGATGAACAATTGGGCATTGGAGATTATTGGTTT
TGTTATTTGGAATTTATTCACAAAGTGGTTTTGGAGATGATTAGATTTACAGGGGATCGC
AGGATTTTATCATTTTGTGTGACCGGTCAGACCGGGCTCTAGTAGCCGGTCAGACCGGCG
TGTAATGCGCGGTCAGACCGGTGCAGCCCGCGGTCTGACCGGCCGACACTGTGTCGGTTT
CGGTTTCGGGTTGTTTATTTGGATATCCGAGTTTATACGTATGTAATACTATTGTTTGCT
GCTAATGAATCAAGTTGGAGAT