Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0472400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:15738394:15744794:1 gene:Os06g0472400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcriptional regulator. (Os06t0472400-01);Similar to predicted protein. (Os06t0472400-02)
Sequence

ATGGAGCTGCTCTGCATCGGGACGGCGGACACCAAGCTGGACGAGCTGCTCTTCCTCGCC
GCCCGCCTCCGCTCCACCCTCGCCGCCACCTCCTCCGCGCAGGTTCAAGTAAGCCTTGTG
GATGTCTCCACAACTAAGAAGGTGACATCACAAGATTTTAAGGGCACCACATTTATCTCA
AGAGATGCAGTTCTTTCGTGTCATTTAGGTGTCGATCAACATGAACTTCCTAGTGACAGA
GGTGAAGCAATCACACTCATGTCAGAGGCTCTCCAGAGCTTTCTAAAAAGAAGATATGAA
AGTGGTACTCTGCTAGGTGCTGTTGGATTAGGAGGCAGTGGAGGAACTGCCCTAATTGCT
CCTGCTCTAAGATCCCTGCCACTCGGAGTGCCTAAGCTTATTGTATCTACTGTTGCTAGT
GGCCAAACGGCACCATATGTTGGAACATCGGACTTGGTGTTGTTTCCTTCAGTTGTTGAC
ATATGTGGCATAAACAGTGTCAGCCGTGTTATATTATCTAATGCTGCTGCAGCTGTTGCT
GGAATGGTGCACGGAATATTAATGGAATCCAATGAATCTGATGAAACTGCCACAAAACCA
ACTATTGGTATTACAATGTTTGGTGTGACAACAACATGTGTAAATATGGTCAAAGAAAGA
CTGAGCAAAGAAGGTTATGAGACACTTGTATTCCATGCCACAGGTGTAGGAGGAAAAGCG
ATGGAAGAACTAGTTAAGGGAGGTTTCATACAGGGTGTATTAGATATAACGACAACAGAA
GTTGCAGACCACATTGTTGGCGGTGTTATGGCATGTGATGATACAAGGTTTGATGCAATT
ATCGACAACAAAATCCCTCTTGTTCTCAGTGTTGGAGCCTTGGATATGGTCAACTTTGGA
GCTCGAGATACGATACCTCCTGATTTCACAGGAAGAAAGATACATGTGCATAATGAGCAG
GTTTCACTGATGCGAACTACAGTAGAAGAGAACAAAAAAATTGCTGAGTTTATAGCTGAT
AAAATAAACAAATCTTCATCGAAGGTTATTGTTTGCCTGCCACAAAAGGGCATCTCTGCA
ATAGATGCACCTAAAATGCCATTTTACGATCTGGAGGCTACATCTACGCTGCTGGATGAA
TTATGTAGCCGTATAGAGAAAACTGACAACAGAGAGGTCAAGATGCTTCCATATCATATA
AATGATCCGGAATTTGCTAATGTTTTGGTGGACGCATTCTTGAGTATGGATGTAAAGGCA
TCTAATACAATAAGTCCAGAAAACAGCATGGTCCAAACTAATCAAGATGTAAATACAAAA
GAATATTGTTCAACACAGAGAACTTCAGATAGTTCTATCATATGGAGATCTCCAGTAGAT
TTTCCTGATGCAAGACCAGAAACTTTGCAAAAGACAAAGTCAGTATTACATAAACTAAAG
CAACAAATTGTTGAGGGTACTCCTGTCATTGGAGCTGGTGCTGGCACTGGCATATCAGCC
AAGTTTGAAGAAGCTGGTGGAGTTGATCTTATAGTTCTGTACAACTCCGGGCGGTTTCGC
ATGGCTGGGAGGGGTTCATTGGCAGGACTATTGCCATTTGCAGATGCAAACGCTATTGTA
CTTGAGATGGCCAATGAAGTGTTGCCTGTGGTTAAAGGAGTTCCGGTTCTTGCTGGGGTT
TGCGCTACTGATCCATTCCGTAGAATGGAGTACTTCCTTAAACAACTAGAAGCTATTGGA
TTTTGTGGTGTCCAAAATTTCCCCACTGTTGGTCTTTTTGATGGCAATTTTCGACAGAAC
TTGGAAGAAACTGGAATGGGCTACAGCTTGGAAGTGGAGATGATCTCAAGAGCTCACAGC
ATGGGTTTTTTGACGACTCCATATGCTTTCAATCCTGAAGAAGCTGCTGCCATGGCCAAG
GCTGGAGCTCATATAATAGTGGCACATATGGGTCTAACAACAGCTGGGTCTATTGGGGCA
AAGACTGCTGTCACTTTAGATGACAGTGTCAAACGTGTTCAAGCCATTGCTGATGCAGCA
CTTGGGATTAATCCTGACATTATTGTTCTGTGTCATGGAGGTCCCATATCAGGGCCGCAG
GAGGCAGAGTTTATCCTAAAGCGCACTAACAGGGTCCATGGATTCTATGGTGCATCAAGC
ATGGAGCGGCTACCAGTTGAGCAAGCTATCACAAACACCATGAGGGAGTATAAACGGATT
TCCATAAAATAA

Peptide Sequence

PEP ID

Os06t0472400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:15738394:15744794:1 gene:Os06g0472400 transcript:Os06t0472400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcriptional regulator. (Os06t0472400-01);Similar to predicted protein. (Os06t0472400-02)
Sequence

MELLCIGTADTKLDELLFLAARLRSTLAATSSAQVQVSLVDVSTTKKVTSQDFKGTTFIS
RDAVLSCHLGVDQHELPSDRGEAITLMSEALQSFLKRRYESGTLLGAVGLGGSGGTALIA
PALRSLPLGVPKLIVSTVASGQTAPYVGTSDLVLFPSVVDICGINSVSRVILSNAAAAVA
GMVHGILMESNESDETATKPTIGITMFGVTTTCVNMVKERLSKEGYETLVFHATGVGGKA
MEELVKGGFIQGVLDITTTEVADHIVGGVMACDDTRFDAIIDNKIPLVLSVGALDMVNFG
ARDTIPPDFTGRKIHVHNEQVSLMRTTVEENKKIAEFIADKINKSSSKVIVCLPQKGISA
IDAPKMPFYDLEATSTLLDELCSRIEKTDNREVKMLPYHINDPEFANVLVDAFLSMDVKA
SNTISPENSMVQTNQDVNTKEYCSTQRTSDSSIIWRSPVDFPDARPETLQKTKSVLHKLK
QQIVEGTPVIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIV
LEMANEVLPVVKGVPVLAGVCATDPFRRMEYFLKQLEAIGFCGVQNFPTVGLFDGNFRQN
LEETGMGYSLEVEMISRAHSMGFLTTPYAFNPEEAAAMAKAGAHIIVAHMGLTTAGSIGA
KTAVTLDDSVKRVQAIADAALGINPDIIVLCHGGPISGPQEAEFILKRTNRVHGFYGASS
MERLPVEQAITNTMREYKRISIK

Transcript Sequence

Transcript ID

Os06t0472400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:15738394:15744794:1 gene:Os06g0472400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcriptional regulator. (Os06t0472400-01);Similar to predicted protein. (Os06t0472400-02)
Sequence

CTTTCTCTCTACCCACCCGCTACCAATCCCCTTCGCTCCGCTCCACTCCTCCGGATCTCC
GCCCCGCCCCTTCCATCTCCGGCGCCGGCGAGAATGGAGCTGCTCTGCATCGGGACGGCG
GACACCAAGCTGGACGAGCTGCTCTTCCTCGCCGCCCGCCTCCGCTCCACCCTCGCCGCC
ACCTCCTCCGCGCAGGTTCAAGTAAGCCTTGTGGATGTCTCCACAACTAAGAAGGTGACA
TCACAAGATTTTAAGGGCACCACATTTATCTCAAGAGATGCAGTTCTTTCGTGTCATTTA
GGTGTCGATCAACATGAACTTCCTAGTGACAGAGGTGAAGCAATCACACTCATGTCAGAG
GCTCTCCAGAGCTTTCTAAAAAGAAGATATGAAAGTGGTACTCTGCTAGGTGCTGTTGGA
TTAGGAGGCAGTGGAGGAACTGCCCTAATTGCTCCTGCTCTAAGATCCCTGCCACTCGGA
GTGCCTAAGCTTATTGTATCTACTGTTGCTAGTGGCCAAACGGCACCATATGTTGGAACA
TCGGACTTGGTGTTGTTTCCTTCAGTTGTTGACATATGTGGCATAAACAGTGTCAGCCGT
GTTATATTATCTAATGCTGCTGCAGCTGTTGCTGGAATGGTGCACGGAATATTAATGGAA
TCCAATGAATCTGATGAAACTGCCACAAAACCAACTATTGGTATTACAATGTTTGGTGTG
ACAACAACATGTGTAAATATGGTCAAAGAAAGACTGAGCAAAGAAGGTTATGAGACACTT
GTATTCCATGCCACAGGTGTAGGAGGAAAAGCGATGGAAGAACTAGTTAAGGGAGGTTTC
ATACAGGGTGTATTAGATATAACGACAACAGAAGTTGCAGACCACATTGTTGGCGGTGTT
ATGGCATGTGATGATACAAGGTTTGATGCAATTATCGACAACAAAATCCCTCTTGTTCTC
AGTGTTGGAGCCTTGGATATGGTCAACTTTGGAGCTCGAGATACGATACCTCCTGATTTC
ACAGGAAGAAAGATACATGTGCATAATGAGCAGGTTTCACTGATGCGAACTACAGTAGAA
GAGAACAAAAAAATTGCTGAGTTTATAGCTGATAAAATAAACAAATCTTCATCGAAGGTT
ATTGTTTGCCTGCCACAAAAGGGCATCTCTGCAATAGATGCACCTAAAATGCCATTTTAC
GATCTGGAGGCTACATCTACGCTGCTGGATGAATTATGTAGCCGTATAGAGAAAACTGAC
AACAGAGAGGTCAAGATGCTTCCATATCATATAAATGATCCGGAATTTGCTAATGTTTTG
GTGGACGCATTCTTGAGTATGGATGTAAAGGCATCTAATACAATAAGTCCAGAAAACAGC
ATGGTCCAAACTAATCAAGATGTAAATACAAAAGAATATTGTTCAACACAGAGAACTTCA
GATAGTTCTATCATATGGAGATCTCCAGTAGATTTTCCTGATGCAAGACCAGAAACTTTG
CAAAAGACAAAGTCAGTATTACATAAACTAAAGCAACAAATTGTTGAGGGTACTCCTGTC
ATTGGAGCTGGTGCTGGCACTGGCATATCAGCCAAGTTTGAAGAAGCTGGTGGAGTTGAT
CTTATAGTTCTGTACAACTCCGGGCGGTTTCGCATGGCTGGGAGGGGTTCATTGGCAGGA
CTATTGCCATTTGCAGATGCAAACGCTATTGTACTTGAGATGGCCAATGAAGTGTTGCCT
GTGGTTAAAGGAGTTCCGGTTCTTGCTGGGGTTTGCGCTACTGATCCATTCCGTAGAATG
GAGTACTTCCTTAAACAACTAGAAGCTATTGGATTTTGTGGTGTCCAAAATTTCCCCACT
GTTGGTCTTTTTGATGGCAATTTTCGACAGAACTTGGAAGAAACTGGAATGGGCTACAGC
TTGGAAGTGGAGATGATCTCAAGAGCTCACAGCATGGGTTTTTTGACGACTCCATATGCT
TTCAATCCTGAAGAAGCTGCTGCCATGGCCAAGGCTGGAGCTCATATAATAGTGGCACAT
ATGGGTCTAACAACAGCTGGGTCTATTGGGGCAAAGACTGCTGTCACTTTAGATGACAGT
GTCAAACGTGTTCAAGCCATTGCTGATGCAGCACTTGGGATTAATCCTGACATTATTGTT
CTGTGTCATGGAGGTCCCATATCAGGGCCGCAGGAGGCAGAGTTTATCCTAAAGCGCACT
AACAGGGTCCATGGATTCTATGGTGCATCAAGCATGGAGCGGCTACCAGTTGAGCAAGCT
ATCACAAACACCATGAGGGAGTATAAACGGATTTCCATAAAATAAGAATGATAGTTCAGA
CTTCAAATATGTCCTTTGCTCTACATGGTACTGATCTTCATACTGATTCAAAGAACAATA
ATGGAAGAGGAAGCCAGGTGTTTGTGCATTGTTGTACCATATGCGGCACATGTACTCGTG
TATTTCAGTCGGAATAAAGAATGATAAGCGAATGATTTCGTGCTTACTTAATAACTATCC
ATACTAAGACGATAAGTTACTGTAACCATGACAAAATCTGTGATAAAGACCGAAATTTTA
CGGACC