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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0342200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:13685423:13686169:1 gene:Os06g0342200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 1A-2 description:Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C). (Os06t0342200-01)
Sequence

ATGCCGAAGAACAAGGGTAAGGGAGGGAAGAACCGCAAGAGGGGTAAGAACGAGGCCGAC
GACGACAAGCGCGAGCTGGTGTTCAAGGAGGACGGGCAGGAGTACGCCCAGGTGACGCGG
ATGCTCGGCAACGGCCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCGCCTCTGCCAC
ATCCGCGGCAAGATGCACAAGAAGGTGTGGATCGCCGCCGGGGACATCATCCTCGTCGGC
CTCCGCGACTACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCC
CGCCTCCTCAAGGCCTACGGCGAGCTCCCCGACACCCTCAGGCTCAACGAGGGCGTCGAC
GTCGACGGGCCCGAGGACGGCGGCGACCACGACGACTACATCCAGTTCGAGGACGAGGAC
ATCGACAAGATCTAA

Peptide Sequence

PEP ID

Os06t0342200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:13685423:13686169:1 gene:Os06g0342200 transcript:Os06t0342200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 1A-2 description:Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C). (Os06t0342200-01)
Sequence

MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH
IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNEGVD
VDGPEDGGDHDDYIQFEDEDIDKI

Transcript Sequence

Transcript ID

Os06t0342200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:13685423:13686169:1 gene:Os06g0342200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 1A-2 description:Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C). (Os06t0342200-01)
Sequence

GAAAAACCGCATCCCGCAACTCCACCGCTCCCAATCTCGATCGAAACGCGAGGGTTTCGC
ATCTCCGCCGACGCCTAGAGGAAGAAGGGATCCGCCGCCGGTAGCCAAGCCATGCCGAAG
AACAAGGGTAAGGGAGGGAAGAACCGCAAGAGGGGTAAGAACGAGGCCGACGACGACAAG
CGCGAGCTGGTGTTCAAGGAGGACGGGCAGGAGTACGCCCAGGTGACGCGGATGCTCGGC
AACGGCCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCGCCTCTGCCACATCCGCGGC
AAGATGCACAAGAAGGTGTGGATCGCCGCCGGGGACATCATCCTCGTCGGCCTCCGCGAC
TACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCCGCCTCCTC
AAGGCCTACGGCGAGCTCCCCGACACCCTCAGGCTCAACGAGGGCGTCGACGTCGACGGG
CCCGAGGACGGCGGCGACCACGACGACTACATCCAGTTCGAGGACGAGGACATCGACAAG
ATCTAAGCTCTTTTCTTCTTTCTCCGCAGCTACAATTTACTGCTATGTTCTAATTAATAG
CTATGTGTGGTACTATGTGGGCTGGCTGTTATGGATTGTTTGGTTGCCGGTTTCATCTTG
TGATATGAGATATTTGTCATGGTTTGAGGTGGTTAAATAATTGTTGGATTCCGTAACTTT
AATCTGGTATACATGATGGTTATGCGT