Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0340200-02
CDS Infomation	cds chromosome:IRGSP-1.0:6:13584735:13591960:-1 gene:Os06g0340200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-01);Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-02);Hypothetical conserved gene. (Os06t0340200-03)
Sequence	ATGGCTCAACAAGCAAAGGAGGTAAACACAAACAGAAGTAGGTGTGGAAGTAGCATCAGC ATGCGAATGGAAGGAGATAGAAATGGTGCCTTGGCGATGCTTTCGATATCCTCCTCCTCG GCAAGATATGGAAATGATCACCAAGAGCTTGCTTCTGCTGCTGCTGCTTTCAGAGAGTCG GCAGGTGATCCGAGGAAACTGTCGTCGGGAATGAGTAGCAGGCTGTTGCCAGCACGGAGC ATGAGGTCTACCGGCGCTGGGGACGATGGCGAGGTGGCGGCGGCGCCGGTGGCTGGCGCT CGGTCGCTGTCCTTCTCCAAGCTCTTCAGCTTCAGAATTGCAAATGCTGCGCGTTGTTCG TCGTCGCTGGATTTTGATCATCCGCTACCTTCAGATGCAGCAAGCAGTGATCACATTTCT GCAAACGATGAGACGACGGCGACGAAGACGAAGACGAAGACGAAGGCGAAGCACGCGAGT GACCACATGAACATCAGCCGCTCACAGTCCGTGCCAATGAGCACCCTGTCGAGATTCAGC TCCAAGGGGGGAGGAGGCTCCAAGAGAGTGGCGGACTCGAGCTCCCTTCGTATTCACGAC GGTGGCAGCGTGCGGTTCAGGGTGTCGGTGATAGGCGCCTCTCCTCCCGACGGCAATGCG GACGCCGCCGCCGCCGCCGGAGAAGAGGAGGACGACGCCGGCAGCGTGGAGGCGGAGGAG GAGGCGCTGGTTTGCCGGATATGCATGGTGGCGCTGTCGGAGGACGGCGCCAGCGGCGGC GGCGGCGGCACGCTGAAGCTGGAGTGCCGGTGCAAGGGGGAGCTCGCGCTGGCGCACGGC GACTGCGCCGTCAAGTGGTTCAGCATCAAGGGCAACGCGACGTGCGACGTCTGCAACCAC GAGGTGCTCAACCTCCCCGTCACGCTGCGCCGCGTCCACGACCGCCAGCAGCTGGTCTAT GAGGCAGCCGCGGCGGCGGCGGCCGCCGCCGCCGCAGCGGCCGGTGACGACATCGCCGGC GGCAACCGGCGAGGAGGGTACAGCTACGGGCGCGTGTGGCGCGGCACGACCATCCTCGTC ATCGTCAGCATGCTGGCCTACTTCTGCTTCCTGGAGCAGCTGCTCGTCGGCGACCACGGC ACGGCGGCGCTGGCCATCTCGCTGCCGTTCGCCTGCGTGCTCGGCCTCTTCTCCTCCCTC ACCACCGCCAAGATGGTGTCCAGGAAGTATGTGTGGATCTACTCAGCTGTGCAATATCTC TTCATCGTGCTTTTCACCCACCTCTTCTACAGATATGTGCGATTGCAAGCGGTGATTGCC ATCATCCTGTCCACCTTCGCGGGCTTTGGCGTGGCCATCTGCGCCAACGCCATCCTCCTC CAGATCATCAGATGGAGGGCCAGGCGGGCATCCATGTCAGCAGCACAGGAAGAAGAGGAA GCTCGCCGTGCTCCCACACAGGCGGACCTCGAGAACGCTCTACCTCCACCCTAG

Peptide Sequence

PEP ID	Os06t0340200-02
PEP Infomation	pep chromosome:IRGSP-1.0:6:13584735:13591960:-1 gene:Os06g0340200 transcript:Os06t0340200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-01);Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-02);Hypothetical conserved gene. (Os06t0340200-03)
Sequence	MAQQAKEVNTNRSRCGSSISMRMEGDRNGALAMLSISSSSARYGNDHQELASAAAAFRES AGDPRKLSSGMSSRLLPARSMRSTGAGDDGEVAAAPVAGARSLSFSKLFSFRIANAARCS SSLDFDHPLPSDAASSDHISANDETTATKTKTKTKAKHASDHMNISRSQSVPMSTLSRFS SKGGGGSKRVADSSSLRIHDGGSVRFRVSVIGASPPDGNADAAAAAGEEEDDAGSVEAEE EALVCRICMVALSEDGASGGGGGTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVCNH EVLNLPVTLRRVHDRQQLVYEAAAAAAAAAAAAAGDDIAGGNRRGGYSYGRVWRGTTILV IVSMLAYFCFLEQLLVGDHGTAALAISLPFACVLGLFSSLTTAKMVSRKYVWIYSAVQYL FIVLFTHLFYRYVRLQAVIAIILSTFAGFGVAICANAILLQIIRWRARRASMSAAQEEEE ARRAPTQADLENALPPP

Transcript Sequence

Transcript ID	Os06t0340200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:13584735:13591960:-1 gene:Os06g0340200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-01);Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-02);Hypothetical conserved gene. (Os06t0340200-03)
Sequence	GCTTGCTATGGCTCAACAAGCAAAGGAGGTAAACACAAACAGAAGTAGGTGTGGAAGTAG CATCAGCATGCGAATGGAAGGAGATAGAAATGGTGCCTTGGCGATGCTTTCGATATCCTC CTCCTCGGCAAGATATGGAAATGATCACCAAGAGCTTGCTTCTGCTGCTGCTGCTTTCAG AGAGTCGGCAGGTGATCCGAGGAAACTGTCGTCGGGAATGAGTAGCAGGCTGTTGCCAGC ACGGAGCATGAGGTCTACCGGCGCTGGGGACGATGGCGAGGTGGCGGCGGCGCCGGTGGC TGGCGCTCGGTCGCTGTCCTTCTCCAAGCTCTTCAGCTTCAGAATTGCAAATGCTGCGCG TTGTTCGTCGTCGCTGGATTTTGATCATCCGCTACCTTCAGATGCAGCAAGCAGTGATCA CATTTCTGCAAACGATGAGACGACGGCGACGAAGACGAAGACGAAGACGAAGGCGAAGCA CGCGAGTGACCACATGAACATCAGCCGCTCACAGTCCGTGCCAATGAGCACCCTGTCGAG ATTCAGCTCCAAGGGGGGAGGAGGCTCCAAGAGAGTGGCGGACTCGAGCTCCCTTCGTAT TCACGACGGTGGCAGCGTGCGGTTCAGGGTGTCGGTGATAGGCGCCTCTCCTCCCGACGG CAATGCGGACGCCGCCGCCGCCGCCGGAGAAGAGGAGGACGACGCCGGCAGCGTGGAGGC GGAGGAGGAGGCGCTGGTTTGCCGGATATGCATGGTGGCGCTGTCGGAGGACGGCGCCAG CGGCGGCGGCGGCGGCACGCTGAAGCTGGAGTGCCGGTGCAAGGGGGAGCTCGCGCTGGC GCACGGCGACTGCGCCGTCAAGTGGTTCAGCATCAAGGGCAACGCGACGTGCGACGTCTG CAACCACGAGGTGCTCAACCTCCCCGTCACGCTGCGCCGCGTCCACGACCGCCAGCAGCT GGTCTATGAGGCAGCCGCGGCGGCGGCGGCCGCCGCCGCCGCAGCGGCCGGTGACGACAT CGCCGGCGGCAACCGGCGAGGAGGGTACAGCTACGGGCGCGTGTGGCGCGGCACGACCAT CCTCGTCATCGTCAGCATGCTGGCCTACTTCTGCTTCCTGGAGCAGCTGCTCGTCGGCGA CCACGGCACGGCGGCGCTGGCCATCTCGCTGCCGTTCGCCTGCGTGCTCGGCCTCTTCTC CTCCCTCACCACCGCCAAGATGGTGTCCAGGAAGTATGTGTGGATCTACTCAGCTGTGCA ATATCTCTTCATCGTGCTTTTCACCCACCTCTTCTACAGATATGTGCGATTGCAAGCGGT GATTGCCATCATCCTGTCCACCTTCGCGGGCTTTGGCGTGGCCATCTGCGCCAACGCCAT CCTCCTCCAGATCATCAGATGGAGGGCCAGGCGGGCATCCATGTCAGCAGCACAGGAAGA AGAGGAAGCTCGCCGTGCTCCCACACAGGCGGACCTCGAGAACGCTCTACCTCCACCCTA GTCCAGCTTGGCAGAGCCCAGTCACCCCCACCTCCCTTTGGTTTGGTTTGTACATATATG GTAACATACAATTTAATACACATAGTAGCATGCGTGTATATTACTTGTTACCATATAGTA CCCCCTCCAGTCAAGTGTATTTGACATTGGGAGTATATATATATAATACTCCCAACGTCA AATGTGTACGTGACCGGAAGAAGTAAAATAGGTAGCTTGTTTGTCTAAATATATGCCTGG CCAGTTTTGTTAATATTAGAATTGTTTGTTTTTGTCTTTGCGAAATCAGGAGTTATGTTT TATTAATGAGTAGTTGGAGTACAGTCCTTTCTAAGCATAATACACGAAAATCCAAGACCA CAAATTAAGCTAGATACGCCATTTATTATTATTAGTAGGCTAGTAGCCTCTGCTTTGCAC ATAGATGAGCAACAACATTGCACATTTGCACTCTATGTGAGGTGAAATTCAAGGAAACTC CGAATGAGCTCCACAACATCAATGGAAATCGCTGAGGCTTTGTTACGAAGGATATATTCT ATTCCACGTTGCTATAACAAGCATTGTGACTCCATGTACGACCTAGGTCGGGTCGGGCAG GAGAGAGGAGCAGTGGCGTGCGGCGCGGCGATGGGGTAGAGGAGCGGTGCGACTTCCACC TCCTCCCTCTCCGAGCACTCGCCAACCTCCTCGACACCTCTCTCTCCGAGCGCTCGCCAA CCTCCTCGCCGGCATCCCAATCTCCTTCCTCTCTGCCGGCGCGGACCTCCTCGCAGCCAC CGCCGGCCACCACGACAGTCGTGTGTGGGCAAGAAAGAGGGGTGGGACATCTGCCGCCGG CTGCATCTGGCGCTCATACGCGCCCGCCGCTGTGCCCGCTGCGCTCGCTGCCGCCCCTAC CGCCATGCCGCGCGCCGCTCCTCTCCTGAGCTGGTGCGCGGCGCGCTGCTCCTCTCCGCC GCCAAGCTCGCCGTAGCGCCGGCCCACATCTCCTTCTCTCCCTCCGCCGCCGTCACGCTG GCCGCCTCTCTCTCCCTCTCCTGCCGCCATCGTCCCCACTCTGCCCGAGGTGGCGACGGA GACAAGTAGGCGATGGAGGGAGAGAGGATCGAAGGGGAGAGTGTGCCACTCGCTGGCGAG CTCGCCGTCGCGCCGGCCGCCACCTCTCCTCCTCTCTCGCCGCTGCCGTCCCCGCTCCAC CGCCGGCCACCTCTCTCCCCCATTGCCGCCGTGCCCGCTTGAGAGAACCCAGAGAGAAGA GAGGAGAAAAAGAAAAAAAAAGAGAGAAATGTGGGACCCACACCATTTTCTCTCACTTAC ATGTGGGCCCCGCATATTAATTTTAATTATTTTTGCTGACTAGGATGCCACGTCAGCGAA ACCAGGCATCTATACTGTCTTGGGACCTTTTATGCACGGTTTTACATAGTTTAGGGGTGC ACATTTCTGGTTTTGTGGTTAAGGGGCCTCAAAAAATCTTAAGGGACGGCCGGTGAACTT ATTCATTCTTTCCCCTCCCTCAGCCTTGTCGCCACCCTGCCCGGCCCACTCCGAGCCACC GCTGCCAGGCGCGCGCCCGTGCGCTGGCAGGTGGGCCCCACTCGTCACGAGCGTCCTCCA CCTCTGCCCGTCACCTGTTCATCTCTCCCGTGAACTCAAGTGCCGCCGCTACCTTTGATC TCCCTCCTCGGTTGATTTTCCTTGAAAGTAATTGCAAAAATTGATTTCTTGTGTAGTAGG CATCAATTCCGTCAACAAATCGCACTCAATACCACATTAAATCGCACTTAATCGGTTTCT TAAACCGGTGTGTCCAATAGGGACCTTCACTGTCGCCAGCGCCGTTTCCCATCCTCATGG TCGACCTCCTCCCCTCTAGCCTATATAAAGGAAACCCCCGAGACCTCCTTCTCCCATTCC CAGTGCCGCTCGAGCACCACGCTCGCTCCATCGCCGTCGTGTCGTTTCGGCGTGCGCTCC AGCCGCCGCTTGGCGTCGCCAAGTCCCGGCGAAGCCACCGCCGGCTTCGTCGTCTCCTCC TCTCCCTCAGCCACGCCTTCATCGAGCTCGGCAAGCCTCGGAGCTCCATCCCCGACGTCA ACCCGAGCCGGCATCATCTTCTTCCTCGTCGCCGTTGCTGTTCCTTGCCGTTCCAGCCCC TCCGGTGAGCCTCGCCACTCCCATGTCGCGTGTCGCTATGACCGGCCGGCTGGTTGCTGG CTGCCATGTCCTCACACACCTCTCTCCCTCCCTCTCCACTGTTTCTCTCTCTCTCCACTG TTACAGCACACAGTAGTTTTTCTTTAAAAAAATTAATTGACAAATCTACTCTATAATTCA CCAACTCAGGCCCGCAAATCACGCCGCCAACAACCCCTCACTCTGACCACGACTCGTGAC GCCGCCGACGCCATCGCGTCGCCGCGTGGCTTCGCACTGATCGAGCGCCGACGCTCCACC ACCGTGCCGACGTCAATCCCCGCCTCCAGATCGACGCGACGTCGCCGGCCTCGAGTGTCT CCTCCGCGTCGCCCAAACTTCATCACTGTCTCATTCTGCCTCCGTCCACGTCCGCGCCAG CTGATATGCCGACAACCCATCGACGAGGGTTTTATCTGTGTCTAATGATTCGATGAATGT TGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGCTGGGTGCTTCTCCATCA GCCGCCGCCGCTGATCTTCTTCCCAGGTCAACTTACTGTAGCCGCCGATTCCCACACATT TCAGTTGTTCATGGTTATTTAATTGAGGGTTACTTAGGTTGTGTTTAGATCCAAAGTTTA GATCCAAACTTCAGTCCTTTTCCATCACATCAACCTGTCATACACACATAACTTTTCAGT CACATCATCTTCAATTTCAACCAAAATCCAAACTTTGCGCTGAACTAAACACAACCTTAG TAGTATATGTTCTCATATGGTCTTTAGTGCTGTCAGTCTGTCATGCATATTCTGCTGCAG CCGAACTTTTTTTTCTTAATATACATGTACTTCCTCCGTTTCACAATGTAAGTCATTCTA GCATTTTCCACATTCATATTGATTTTCCATATTCATATTGATTTTCCACATTCATATTGA TGTTAATGAATCTAAGATAGAAATATATGTCTAGATTCATTAACATCAATATAAATGTGG AAAATGCTAAAATGACTTACATTGTGAAACGGAGGGAGTATATATTTTCATATAGGCAAA CATTGGGATGCGACATTATTAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAA TAATAAGGATGTCTATGGCCCTCAATTTCCTCTTTTCTATACCTCTATGCAATTCTTTTA TCTGTTAGTATTATATATTACCACCAAATTCATATACACATGATATATAATCTTTGAGAT GATATTTTATAGTGTAGTCTTACCATCAATTTCTTTTGTAGTGGATCTGATCAGGTAGGT TTTTTGTGTGTGAGATAGGTTTTACAAACTAGTACCTAGAGTTTTGATTCTTCTCAAGTG AGGTCCTTGGTTTGAGCTGACACAGAGCTAGCCATGGCCGAGCTCGTTCTCGAGCTCGCC GGCGGCAAACGGCGGCAGATCTCGGCGTGCAACCTAAGGAGAAAATGTAAAGGGGTTCAA GGCGAGGCTATAGGTGGTATTCTTGCAAGCATTGGTCACCGGAATTAATGGCGACGGCGG CGCGAGCGGCGCGGTGGTTCTCCGGTGACGGTGCATGTGGAGCTAGAGCATTGATCTAGA TGTTTAGCTACACACACGGTGTTGAATAGGTCTCAGGAAAGCTTCATGCCCGAGAAATTG AACTGTGACTCACCGGAGAGGGAGAAATCGAAGGTGGAGCTTGACGGCTGGAATTGGGGA AGAGGGAGTCAATCTCCCTCCTCAGTGCACGATTCTTGGGAATTCTTGGGGGGTTTTTGG AGAGGATGTGGAGAAGGTGTTGGTGGTGCTGTGGCTCAGCCTACGACGGTCTACAATGGC CGGAACGGCGACAATGTCGCTGCGGCGGTGCGCAGAGCGCGCTCCAGAGCTCCGGTGGGC ACGGCAGCGTTCCCGTCGATTGGCTGCACGAGAGAGGATGAAATCAAAAGGAGAAATATT CGGCATGGTGAGGAGAGTATGGAACGTGGAAGAGATAGGATTGGCGAAGATTCGTCTTCA TCACGGCCGGCGGTGAGATCGAAGGCGAGGAGAGCAGCTAGAGCTCTCTCCCTCGGTTCT CTTGGCATAGGAATGGTGAGTGAGGTGTGGCGATGTGACTGGGAAAGATAGAGAGCAAGG TTTGGCGTTTTGAGGGCGTGGACACGTCGCTCCCACGCGTCGACGCGCCCAGCTCTCGGT CTCTCTCTCCTGTCTCTCTGGTCTGTTGGTCGGGTAGAGCGGTGGAGGAGGAGATGGACA GGGCGTGGGCAAGCCAGGGAGGCTGCCAGGTGGGCCCAGGTCGTGGCAAACTAGGTGGAA GAGAGAGGTGTGGGTACAAACGTGGGTGAGATTGGTTTTTGGATGAATTTCCGGAATTAT TTTTTCCTAACTTTGTAGCTTCATAACTTAATGTGTGGACGAGATTAACTAGTGTTGATT TTACTGGAGGC