Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0336500-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:13414641:13418272:1 gene:Os06g0336500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE D5 description:Similar to CSLD2 (Fragment). (Os06t0336500-01)
Sequence	ATGTCGGTCGACTACGCCAACTACACCGTCCTCATGCCGCCCACCCCGGACAACCAGCCG TCCGGGGGTGCCCCGCCCGCGGCGCCGTCCGCCGGTGGCGCTAGGCCGGGCGATCTGCCG CTCCCGCCCTATGGCTCGTCGTCCTCCTCCAGGCTCGTCAACCGGCGCGGTGGCGGCGAC GACGGCGCCAAGATGGACCGGCGGCTGTCGACGGCGCGCGTCCCGGCGCCGTCCAGCAAC AAGTCGCTGCTGGTGCGCAGCCAGACCGGTGACTTCGACCACAACCGGTGGCTGTTCGAG ACCAAGGGCACGTACGGCATCGGGAACGCCTACTGGCCCCAGGACAACGTGTACGGCGAC GACGGCGGCGGCGGCGCCGTCAAGATGGAGGACCTCGTCGAGAAGCCGTGGAAGCCGCTG AGCCGCAAGGTGCCCATCCCTCCGGGCATCCTCAGCCCCTACAGGCTGCTGGTGTTGGTG CGGTTCGTGGCGCTCTTCCTCTTCTTGGTGTGGCGCGTCACCAACCCTAACATGGACGCG CTCTGGCTGTGGGGGATCTCCATCGTGTGCGAGTTTTGGTTCGCCTTCTCCTGGCTGCTC GACCAGATGCCCAAGCTGAACCCGATCAACCGCGCCGCCGACCTCGCCGCGCTCAAGGAG AAGTTCGAGTCGCCGTCGCCGACGAACCCGACGGGGCGCTCCGACCTGCCGGGGCTTGAC GTCTTCATCTCCACCGCCGACCCCTACAAGGAGCCGACGCTGGTGACGGCCAACACGCTC CTCTCCATCCTCGCCACCGAGTACCCCGTGGAGAAGCTGTTCGTCTACATCTCCGACGAC GGCGGCGCGCTGCTGACCTTCGAGTCCATGGCGGAGGCGTGCGCGTTCGCCAAGGTGTGG GTGCCCTTCTGCCGCAAGCACAGCATCGAGCCGCGCAACCCGGATTCCTACTTCACGCAG AAGGGCGACCCGACCAAGGGCAAGAAGCGGCCGGACTTCGTCAAGGACCGCCGCTGGATC AAGCGCGAGTACGACGAGTTCAAGATCCGCGTGAACAGCCTCCCCGACCTCATCCGCCGC CGCGCCAACGCCCTGAACGCCCGCGAGCGCAAGCTGGCGCGCGACAAGCAGGCCGCCGGC GACGCCGACGCACTCGCCTCCGTGAAGGCCGCCACCTGGATGGCCGACGGCACGCACTGG CCGGGCACCTGGCTGGACCCGTCCCCCGACCACGCCAAGGGCGACCACGCCAGCATCGTG CAGGTGATGATCAAGAACCCGCACCACGACGTGGTGTACGGCGAGGCCGGCGACCACCCG TACCTGGACATGACCGACGTGGACATGCGCATCCCGATGTTCGCCTACCTGTCGCGGGAG AAGCGCGCCGGGTACGACCACAACAAGAAGGCCGGCGCCATGAACGCCATGGTGCGCGCG TCGGCGATCCTCTCCAATGGCCCCTTCATGCTCAACTTCGACTGCGACCACTACATCTAC AACTGCCAGGCCATCCGCGAGGCCATGTGCTACATGCTCGACCGCGGCGGCGACCGCATC TGCTACATCCAGTTCCCGCAGCGGTTCGAGGGGATCGACCCCTCCGACCGCTACGCCAAC CACAACACCGTCTTCTTCGACGGCAACATGCGCGCGCTCGACGGCCTCCAGGGCCCCATG TACGTCGGCACGGGCTGCCTCTTCCGCCGCTACGCCATCTACGGCTTCAACCCGCCGCGC GCCATCGAGTACCGCGGCACCTACGGCCAGACCAAGGTGCCCATCGACCCGCGACAAGGC AGCGAAGCCATGCCCGGCGCCGGCGGCGGCCGCAGCGGCGGCGGCAGCGTGGGCGGCGAC CACGAGCTGCAGGCGCTGTCGACGGCGCACCCGGACCACGAGGCGCCGCAGAAGTTCGGC AAGTCCAAGATGTTCATCGAGTCCATCGCGGTGGCCGAGTACCAGGGGCGGCCGCTGCAG GACCACCCGTCCGTCCTGAACGGTCGCCCCCCCGGCGCGCTGCTGATGCCGCGGCCGCCT CTGGACGCGGCGACGGTGGCGGAGTCGGTGTCGGTGATCTCGTGCTGGTACGAGGACAAC ACGGAGTGGGGGCAGCGCGTGGGGTGGATCTACGGGTCGGTGACGGAGGACGTGGTGACC GGGTACCGGATGCACAACCGCGGGTGGCGGTCGGTGTACTGCATCACCCGGCGCGACGCG TTCCGCGGGACGGCGCCGATCAACCTGACGGACAGGCTGCACCAGGTGCTCCGGTGGGCG ACGGGGTCGGTGGAGATCTTCTTCTCCAAGAACAACGCGGTGCTGGCGTCCAGGCGGCTC AAGTTCCTGCAGCGGATGGCGTACCTCAACGTTGGGATCTACCCCTTCACGTCGCTCTTC CTCATCATGTACTGCCTCCTCCCGGCGCTGTCGCTCTTCTCGGGGCAGTTCATCGTGGCG ACGCTGGACCCGACGTTCCTCTCCTACCTGCTGCTCATCACCATCACCCTCATGCTGCTC TGCCTGCTGGAGGTGAAGTGGTCCGGGATCGGGCTGGAGGAGTGGTGGCGGAACGAGCAG TTCTGGGTGATCGGCGGCACGTCGGCGCACCTGGCGGCGGTGCTGCAGGGCCTGCTCAAG GTGGTGGCCGGGATCGAGATCTCCTTCACGCTCACGGCCAAGGCGGCGGCGGAGGACGAC GACGACCCCTTCGCCGAGCTCTACCTCATCAAGTGGACGTCGCTCTTCATCCCGCCGCTC GCCGTCATCGGGATCAACATCATCGCGCTCGTCGTCGGCGTGTCGCGGACGGTGTACGCG GAGATCCCGCAGTACAGCAAGCTGCTCGGCGGCGGCTTCTTCAGCTTCTGGGTGCTCGCG CACTACTACCCGTTCGCCAAGGGCCTCATGGGCCGCCGCGGCCGGACGCCCACCATCGTC TACGTCTGGGCCGGCCTCATCTCCATCACCGTCTCTCTCCTCTGGATCACCATTAGCCCC CCGGATGATAGCGTCGCGCAGGGCGGCATCGACGTGTGA

Peptide Sequence

PEP ID	Os06t0336500-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:13414641:13418272:1 gene:Os06g0336500 transcript:Os06t0336500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE D5 description:Similar to CSLD2 (Fragment). (Os06t0336500-01)
Sequence	MSVDYANYTVLMPPTPDNQPSGGAPPAAPSAGGARPGDLPLPPYGSSSSSRLVNRRGGGD DGAKMDRRLSTARVPAPSSNKSLLVRSQTGDFDHNRWLFETKGTYGIGNAYWPQDNVYGD DGGGGAVKMEDLVEKPWKPLSRKVPIPPGILSPYRLLVLVRFVALFLFLVWRVTNPNMDA LWLWGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRSDLPGLD VFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVW VPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFVKDRRWIKREYDEFKIRVNSLPDLIRR RANALNARERKLARDKQAAGDADALASVKAATWMADGTHWPGTWLDPSPDHAKGDHASIV QVMIKNPHHDVVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAMVRA SAILSNGPFMLNFDCDHYIYNCQAIREAMCYMLDRGGDRICYIQFPQRFEGIDPSDRYAN HNTVFFDGNMRALDGLQGPMYVGTGCLFRRYAIYGFNPPRAIEYRGTYGQTKVPIDPRQG SEAMPGAGGGRSGGGSVGGDHELQALSTAHPDHEAPQKFGKSKMFIESIAVAEYQGRPLQ DHPSVLNGRPPGALLMPRPPLDAATVAESVSVISCWYEDNTEWGQRVGWIYGSVTEDVVT GYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAVLASRRL KFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLL CLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDD DDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLA HYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISPPDDSVAQGGIDV

Transcript Sequence

Transcript ID	Os06t0336500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:13414641:13418272:1 gene:Os06g0336500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE D5 description:Similar to CSLD2 (Fragment). (Os06t0336500-01)
Sequence	CTTCGCAGCAATGGCGAGAGCCGCATGGGGGCTCCGAGAAGCTAGCTAGCTAGGACGAAC GCGAATGTCCTCGTCGTCGGCGGCACCCAGGCAGCCACCCGAGACAGGTTTACGCGGCGG ACGGCGAGCCTAGCGGCCTCCCGCGGCCGCAGCCTCTCCAACCCACGACCACGACGACCA CCTCGACGTCGCGCTGGAGTACCCGTCCTTCGCCGCCATGTCGGTCGACTACGCCAACTA CACCGTCCTCATGCCGCCCACCCCGGACAACCAGCCGTCCGGGGGTGCCCCGCCCGCGGC GCCGTCCGCCGGTGGCGCTAGGCCGGGCGATCTGCCGCTCCCGCCCTATGGCTCGTCGTC CTCCTCCAGGCTCGTCAACCGGCGCGGTGGCGGCGACGACGGCGCCAAGATGGACCGGCG GCTGTCGACGGCGCGCGTCCCGGCGCCGTCCAGCAACAAGTCGCTGCTGGTGCGCAGCCA GACCGGTGACTTCGACCACAACCGGTGGCTGTTCGAGACCAAGGGCACGTACGGCATCGG GAACGCCTACTGGCCCCAGGACAACGTGTACGGCGACGACGGCGGCGGCGGCGCCGTCAA GATGGAGGACCTCGTCGAGAAGCCGTGGAAGCCGCTGAGCCGCAAGGTGCCCATCCCTCC GGGCATCCTCAGCCCCTACAGGCTGCTGGTGTTGGTGCGGTTCGTGGCGCTCTTCCTCTT CTTGGTGTGGCGCGTCACCAACCCTAACATGGACGCGCTCTGGCTGTGGGGGATCTCCAT CGTGTGCGAGTTTTGGTTCGCCTTCTCCTGGCTGCTCGACCAGATGCCCAAGCTGAACCC GATCAACCGCGCCGCCGACCTCGCCGCGCTCAAGGAGAAGTTCGAGTCGCCGTCGCCGAC GAACCCGACGGGGCGCTCCGACCTGCCGGGGCTTGACGTCTTCATCTCCACCGCCGACCC CTACAAGGAGCCGACGCTGGTGACGGCCAACACGCTCCTCTCCATCCTCGCCACCGAGTA CCCCGTGGAGAAGCTGTTCGTCTACATCTCCGACGACGGCGGCGCGCTGCTGACCTTCGA GTCCATGGCGGAGGCGTGCGCGTTCGCCAAGGTGTGGGTGCCCTTCTGCCGCAAGCACAG CATCGAGCCGCGCAACCCGGATTCCTACTTCACGCAGAAGGGCGACCCGACCAAGGGCAA GAAGCGGCCGGACTTCGTCAAGGACCGCCGCTGGATCAAGCGCGAGTACGACGAGTTCAA GATCCGCGTGAACAGCCTCCCCGACCTCATCCGCCGCCGCGCCAACGCCCTGAACGCCCG CGAGCGCAAGCTGGCGCGCGACAAGCAGGCCGCCGGCGACGCCGACGCACTCGCCTCCGT GAAGGCCGCCACCTGGATGGCCGACGGCACGCACTGGCCGGGCACCTGGCTGGACCCGTC CCCCGACCACGCCAAGGGCGACCACGCCAGCATCGTGCAGGTGATGATCAAGAACCCGCA CCACGACGTGGTGTACGGCGAGGCCGGCGACCACCCGTACCTGGACATGACCGACGTGGA CATGCGCATCCCGATGTTCGCCTACCTGTCGCGGGAGAAGCGCGCCGGGTACGACCACAA CAAGAAGGCCGGCGCCATGAACGCCATGGTGCGCGCGTCGGCGATCCTCTCCAATGGCCC CTTCATGCTCAACTTCGACTGCGACCACTACATCTACAACTGCCAGGCCATCCGCGAGGC CATGTGCTACATGCTCGACCGCGGCGGCGACCGCATCTGCTACATCCAGTTCCCGCAGCG GTTCGAGGGGATCGACCCCTCCGACCGCTACGCCAACCACAACACCGTCTTCTTCGACGG CAACATGCGCGCGCTCGACGGCCTCCAGGGCCCCATGTACGTCGGCACGGGCTGCCTCTT CCGCCGCTACGCCATCTACGGCTTCAACCCGCCGCGCGCCATCGAGTACCGCGGCACCTA CGGCCAGACCAAGGTGCCCATCGACCCGCGACAAGGCAGCGAAGCCATGCCCGGCGCCGG CGGCGGCCGCAGCGGCGGCGGCAGCGTGGGCGGCGACCACGAGCTGCAGGCGCTGTCGAC GGCGCACCCGGACCACGAGGCGCCGCAGAAGTTCGGCAAGTCCAAGATGTTCATCGAGTC CATCGCGGTGGCCGAGTACCAGGGGCGGCCGCTGCAGGACCACCCGTCCGTCCTGAACGG TCGCCCCCCCGGCGCGCTGCTGATGCCGCGGCCGCCTCTGGACGCGGCGACGGTGGCGGA GTCGGTGTCGGTGATCTCGTGCTGGTACGAGGACAACACGGAGTGGGGGCAGCGCGTGGG GTGGATCTACGGGTCGGTGACGGAGGACGTGGTGACCGGGTACCGGATGCACAACCGCGG GTGGCGGTCGGTGTACTGCATCACCCGGCGCGACGCGTTCCGCGGGACGGCGCCGATCAA CCTGACGGACAGGCTGCACCAGGTGCTCCGGTGGGCGACGGGGTCGGTGGAGATCTTCTT CTCCAAGAACAACGCGGTGCTGGCGTCCAGGCGGCTCAAGTTCCTGCAGCGGATGGCGTA CCTCAACGTTGGGATCTACCCCTTCACGTCGCTCTTCCTCATCATGTACTGCCTCCTCCC GGCGCTGTCGCTCTTCTCGGGGCAGTTCATCGTGGCGACGCTGGACCCGACGTTCCTCTC CTACCTGCTGCTCATCACCATCACCCTCATGCTGCTCTGCCTGCTGGAGGTGAAGTGGTC CGGGATCGGGCTGGAGGAGTGGTGGCGGAACGAGCAGTTCTGGGTGATCGGCGGCACGTC GGCGCACCTGGCGGCGGTGCTGCAGGGCCTGCTCAAGGTGGTGGCCGGGATCGAGATCTC CTTCACGCTCACGGCCAAGGCGGCGGCGGAGGACGACGACGACCCCTTCGCCGAGCTCTA CCTCATCAAGTGGACGTCGCTCTTCATCCCGCCGCTCGCCGTCATCGGGATCAACATCAT CGCGCTCGTCGTCGGCGTGTCGCGGACGGTGTACGCGGAGATCCCGCAGTACAGCAAGCT GCTCGGCGGCGGCTTCTTCAGCTTCTGGGTGCTCGCGCACTACTACCCGTTCGCCAAGGG CCTCATGGGCCGCCGCGGCCGGACGCCCACCATCGTCTACGTCTGGGCCGGCCTCATCTC CATCACCGTCTCTCTCCTCTGGATCACCATTAGCCCCCCGGATGATAGCGTCGCGCAGGG CGGCATCGACGTGTGACTTTTCGTGACACACACCATCACCCATCACTGGTACTAAGATCG ATCGAGATATGCATGGCCAGACATACAAGAAATTGCCAAGAGATTTATATGTGCCAATTG CATGAACCGTGCACTACATGCATCGATCAGATTTGCACTGTACGTTCAAGATGTTCTGGT TAGTGTGTCGTGTTGGAGTACTGATTTGGTTTTTGTAAGAAAGAATTTGCTGGGTTTATT AGCATGTACGTCCTGTGTTACTTAAGGATGCCAGAGCAGGGTCCATTTTGTACAAGAGTT TCCCATGTGTGTACCAATATACGGACAGGGCAGTACTGACTGACTGTACATGATTTTCTG TATTTGGGTTCTGGTAAAATTACCTATTCTTG