Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0335500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:13345347:13349055:1 gene:Os06g0335500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA21 description:AUX/IAA protein family protein. (Os06t0335500-01);Similar to Auxin-responsive protein IAA21. (Os06t0335500-02)
Sequence

ATGGCGCCGCCACAGGAGCGGGACTACATCGGGCTGTCGCCGGCGGCGGCGGCGGCGCTG
GCAACGGAGCTGCGCCTTGGGCTGCCGGGGACTGCGGAGGAGGCTGAGTCGGAGGGCGGC
GGAGGAGGAGGGACGGATGCGGCTCCGCTGACGCTCGAGCTGCTGCCCAAGGGCGGGGCC
AAGCGCGGGTTCGCGGACGCCATCGTTGGGGGTCCCGCCGGCCAGCGGCGGGAGGCGGCC
GGGGGCAAGGCGGCGGCGGCGGCGGCGGAGGCCGAGGAGGAGGAGGAGAAGAAGAAGGCG
CAGGCGCCGGCGGCGAAGGCACAGGTGGTAGGATGGCCACCAATCCGCAGCTACAGGAAG
AACACCATGGCGATGAGCCAGCCTGCTCTGAAAGGCAAAGACGACGGCGAGGCGAAGCAG
GCTCCGGCATCCGGTTGCCTCTATGTCAAGGTGAGCATGGATGGTGCTCCTTACCTCAGG
AAGGTGGACCTCAAGATGTACAAGAACTACAAGGAGCTCTCTTTGGCTCTGGAGAAGATG
TTCAGCTGCTTTACCGTCGGTCATGGTGAATCAAATGGGAAGTCAGGGAGAGATGGATTA
TCTGATTGCCGCCTGATGGATCTTAAAAATGGAACAGAACTTGTGCTCACTTATGAGGAC
AAGGATGAAGATTGGATGCTTGTTGGTGATGTTCCGTGGCGAATGTTCACAGACAGCTGT
AGGAGGCTGAGGATTATGAAGGGGTCAGATGCAGTGGGCCTTGCTCCAAGAGCCACTGAC
AAGAGCAAAAATCGGAACTGA

Peptide Sequence

PEP ID

Os06t0335500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:13345347:13349055:1 gene:Os06g0335500 transcript:Os06t0335500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA21 description:AUX/IAA protein family protein. (Os06t0335500-01);Similar to Auxin-responsive protein IAA21. (Os06t0335500-02)
Sequence

MAPPQERDYIGLSPAAAAALATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGA
KRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRK
NTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKM
FSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSC
RRLRIMKGSDAVGLAPRATDKSKNRN

Transcript Sequence

Transcript ID

Os06t0335500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:13345347:13349055:1 gene:Os06g0335500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA21 description:AUX/IAA protein family protein. (Os06t0335500-01);Similar to Auxin-responsive protein IAA21. (Os06t0335500-02)
Sequence

GTCTTCCTCCTCCCACTCTCGCACTTCTCGCATCGCAAAGCTCGGCAGCAAAAGCAAAGC
AAAGCCAAGCCAAGCTTGAAGCTCCCCGCACTGAGCCAAGAAGCCTCCACCTCAATCCGA
AAGAGATCTCGTGCGCGCACGGCGATGCGGTGAATCGGGCATGGCGCCGCCACAGGAGCG
GGACTACATCGGGCTGTCGCCGGCGGCGGCGGCGGCGCTGGCAACGGAGCTGCGCCTTGG
GCTGCCGGGGACTGCGGAGGAGGCTGAGTCGGAGGGCGGCGGAGGAGGAGGGACGGATGC
GGCTCCGCTGACGCTCGAGCTGCTGCCCAAGGGCGGGGCCAAGCGCGGGTTCGCGGACGC
CATCGTTGGGGGTCCCGCCGGCCAGCGGCGGGAGGCGGCCGGGGGCAAGGCGGCGGCGGC
GGCGGCGGAGGCCGAGGAGGAGGAGGAGAAGAAGAAGGCGCAGGCGCCGGCGGCGAAGGC
ACAGGTGGTAGGATGGCCACCAATCCGCAGCTACAGGAAGAACACCATGGCGATGAGCCA
GCCTGCTCTGAAAGGCAAAGACGACGGCGAGGCGAAGCAGGCTCCGGCATCCGGTTGCCT
CTATGTCAAGGTGAGCATGGATGGTGCTCCTTACCTCAGGAAGGTGGACCTCAAGATGTA
CAAGAACTACAAGGAGCTCTCTTTGGCTCTGGAGAAGATGTTCAGCTGCTTTACCGTCGG
TCATGGTGAATCAAATGGGAAGTCAGGGAGAGATGGATTATCTGATTGCCGCCTGATGGA
TCTTAAAAATGGAACAGAACTTGTGCTCACTTATGAGGACAAGGATGAAGATTGGATGCT
TGTTGGTGATGTTCCGTGGCGAATGTTCACAGACAGCTGTAGGAGGCTGAGGATTATGAA
GGGGTCAGATGCAGTGGGCCTTGCTCCAAGAGCCACTGACAAGAGCAAAAATCGGAACTG
AGCAAAAGATGAACCCAATATGAATATCCGACCCCTACAATCACATCACTTTTACTTGTA
AGGTCCCATTCTCTAAACCACAAGGGTAATGGTCTAAGTTGCGAGAAGGGGATTACTTAT
ACCTATGTGTCACCCTCTTTTTTTTTTGTTTTTATTTGTACCAATTATGTTAGATTTTAA
GCGTAAGTTGTGTAAGTTCCTGTAAGTTGTCTACTTAACCTTGCTTGTAGTTTCTTCTGT
AAATTGTTGTGCTGTATGATGCAAACTATTTTTGGTATTTTACTTGGTGCTTGCAAGTTG
CAATTGTCCGTGC