Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0323100-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:12604824:12606640:1 gene:Os06g0323100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H1005F08.18 protein. (Os06t0323100-01)
Sequence

AGCTCAGTGCAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGAC
AAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGC
TGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAG
CTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGG
TTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCG
CACGCCGCTTCCTCCGGCGACGGCAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGC
TCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGT
CTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAAC
AAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAG
TTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGC
GCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGC
AGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGG
TTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAG
GAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTG
ATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGC
AGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGG
GCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAG
CTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAA

Peptide Sequence

PEP ID

Os06t0323100-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:12604824:12606640:1 gene:Os06g0323100 transcript:Os06t0323100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H1005F08.18 protein. (Os06t0323100-01)
Sequence

SSVQLRDLQMMLYALEETLDKIAIPPRGPGRLLLTAADLGCSCGRSSLVVADAIVQHMTK
LCRGRGKHVDAVAAADPEFWFYFSDLPSNDFNTLFSLLPPHAASSGDGSGRRYFAAAVPG
SFHDRLFPERSIDVFTSTFCLHWLSQVPDEVADTRSPAYNKGKVFVQGSSEETGTAYRRQ
FQSDMARFLRCRAAELKPGGAMFLVFVGRPSSAGPTDQGRSLNLLGTMFEESWRDLVDEG
LIDGGRMDSFNIPSYAATLEEFRESVDADGSFAVNRLEHVMGGRLAVDDDPHDDRCAVGR
RVANNQRSIFGPLVEAHIGRALADELFVRMERRAEELSDELVDEMGVRFHILCSLSLV

Transcript Sequence

Transcript ID

Os06t0323100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:12604824:12606640:1 gene:Os06g0323100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H1005F08.18 protein. (Os06t0323100-01)
Sequence

GTAGTGTTCGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTC
TGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGT
TGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCC
CTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCC
GCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTC
GCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCG
ACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCT
CCGGCGACGGCAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACC
GTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCT
CTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGT
TCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACA
TGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAG
TCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGC
TGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCG
GGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGT
CCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTC
TCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACA
ACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACG
AGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGA
TGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTA
CAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAA
TTGTATTTGCTAAATAAGTATGTTTAAAATATAG